Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01114 ATGTCTAAGGATCTCGAAGCCGGTGGGTTCGCTACCAAGGACTACCAAGACCCACCACCAGCACCATTGATCGACGCCGACGAGTTCACTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAACCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGGGTCGGTATTCTTGGCATTGCTTGGGCATTCGGCGGCATGATTTTCGTCCTCGTTTACTGTACCGCTGGAATTTCCGGAGGCCACATTAACCCGGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCTTTGGTTAGAGCAATTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCTTTAGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCACTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAACGGAATGCCAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCAATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCCGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATCTTTTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATCATACTGAGAGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACCTCCGTTTAA 855 51.81 MSKDLEAGGFATKDYQDPPPAPLIDADEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9045777 9047124 - Carg15272-RA Car03g01114 145166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01114 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Car03g01114 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Car03g01114 284 PANTHER AQUAPORIN PIP2-4-RELATED 8 281 - -
Car03g01114 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Car03g01114 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01114 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01114 Car-Chr3:9045777 Car04g02491 Car-Chr4:19784872 6.16E-169 dispersed
Car18g00101 Car-Chr18:544821 Car03g01114 Car-Chr3:9045777 5.69E-32 dispersed
Car03g01114 Car-Chr3:9045777 Car04g01446 Car-Chr4:8395801 4.25E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01114 K09872 - csv:101215366 538.88