Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01165 ATGGCTTCATCAAACAGTCACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAATTCTCATCACCAATGGCAACATGACATCAACTACCTCAGATCTGCCCCTTACAACACAGTTGTTGGTGGGTATGAAGAGAAAAGTCCAGACCCAAAGCCAAGATGGAATCCAAAGCCTGAACAAATTAGGATTCTTGAAGCGATTTTCAATTCAGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTCGAGGTCAGTTACAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAACAAACTCCGCCATCTCCATAACTCCAAATCCAATCATAATTCCCCAACCACCACCACCACCGCCGCCGCCGCCGCCGCAACTACAACAACAACAAAAACAACTACTCTTTCTCCCACCGCCGCCACCACTTGTTCTTCCTCTTCTTCCTCCGACAAATCCTCCCCCAAAATATCACCCATGAAAAGTTTTACCTCCAATTCGGTGTCTCAGAGCTACCTTCAACAACCCACGAACGAGCTCTTGCCTGAATCCTTCTTCTTCCCAATGCCACAAACCGGCGACGGCGGCGGTGTAATCTCTAATTTGGGTCAAGGGTTTTGCTTTTCTGAGCTTTGTAGTGTAGTGCAGCACGTTCCTGACCATGGGTTCGAATCTTGCACAAACCTGTTGCTGAGTGAGTCTGAGCCATTTAAGAAAGATTTGATGAAATCACAGCCACAGCCACAGTTCATGAATTATCATCCTTATTTGAATATCGCTACGGATCAAAGCCTTCCCCAAACAACAATTTCCACCGCAATTCCTCAAGGTGTAGGTGAAGTTTATGGAGTAGGAGGGAAATCAACGGTGTTCATCAATGGTGTAGCGTTCGAGGTTGGTTGTGGGCCGTTTAATGTTCGTGAGGCTTTTGGTGATGATGCCGTTCTGATTCACTCCACCGGTCAGCCTGTCCTGACCAATGACTGGGGCCTCACTCTCCACTCACTCCAACATGGCGCTTACTATTATCTGATATAA 1068 45.97 MASSNSHWPSMFKSKPCNSHHQWQHDINYLRSAPYNTVVGGYEEKSPDPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRGQLQEYGQVGDANVFYWFQNRKSRSKNKLRHLHNSKSNHNSPTTTTTAAAAAATTTTTKTTTLSPTAATTCSSSSSSDKSSPKISPMKSFTSNSVSQSYLQQPTNELLPESFFFPMPQTGDGGGVISNLGQGFCFSELCSVVQHVPDHGFESCTNLLLSESEPFKKDLMKSQPQPQFMNYHPYLNIATDQSLPQTTISTAIPQGVGEVYGVGGKSTVFINGVAFEVGCGPFNVREAFGDDAVLIHSTGQPVLTNDWGLTLHSLQHGAYYYLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9289111 9290562 - Carg15323-RA Car03g01165 145217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01165 355 Pfam Homeodomain 50 110 IPR001356 GO:0003677
Car03g01165 355 MobiDBLite consensus disorder prediction 109 172 - -
Car03g01165 355 ProSiteProfiles 'Homeobox' domain profile. 46 111 IPR001356 GO:0003677
Car03g01165 355 MobiDBLite consensus disorder prediction 119 172 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01165 Car07g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01165 Car-Chr3:9289111 Car14g00419 Car-Chr14:2139594 3.90E-15 dispersed
Car03g01165 Car-Chr3:9289111 Car07g00176 Car-Chr7:1016031 1.04E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3202 PF00046 Homeodomain 3.90E-14 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01165 - - bhj:120074379 489.574