Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01185 ATGGCTCAGTTTCATGGTAGCGCCACGGCTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGTGGTGAAGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCTTGTCCAAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGTAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCCAATTGCCGGACGCTTTCCGGTGAGCTGCCTGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTGGCGGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAATACGGTCAAACGTCTTAA 513 49.71 MAQFHGSATAGIKLFGTIIPLQTRKVKDQPEKGGGGGEGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQVFPLKRQKIIGQYGQTS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9370387 9370899 - Carg15343-RA Car03g01185 145237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01185 170 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677|GO:0006355
Car03g01185 170 MobiDBLite consensus disorder prediction 24 46 - -
Car03g01185 170 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Car03g01185 170 PANTHER CYCLIC DOF FACTOR 2 7 163 IPR045174 GO:0003700|GO:0006355
Car03g01185 170 MobiDBLite consensus disorder prediction 25 46 - -
Car03g01185 170 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Car03g01185 170 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 163 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01185 Car18g00388 CCT
Car03g01185 Car13g00488 CCT
Car03g01185 Car07g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01185 Car-Chr3:9370387 Car14g00485 Car-Chr14:2606480 2.21E-37 dispersed
Car13g00488 Car-Chr13:7090732 Car03g01185 Car-Chr3:9370387 9.49E-54 wgd
Car18g00388 Car-Chr18:2375129 Car03g01185 Car-Chr3:9370387 5.71E-50 wgd
Car03g01185 Car-Chr3:9370387 Car07g00157 Car-Chr7:943823 1.89E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3204 PF02701 zf-Dof 1.20E-31 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01185 - - csv:101215015 315.079