Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01208 ATGGCTGAGGTTTCTGGATCAACCAATGGACACCATGCTGTTTCTTTCAACATCAAAGATGAATCCACTGCCGTCACCAGCAGACAAGAAGCCGACTGGATCTCTGTTCCTTTCATTCAAAAGTTGATTGCAGAGATTGTGGGGACGTATTTCTTGATATTTGCCGGCGGGGCGTCGGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTGCAATTGTTTGGGGCTTGGCGGTAATGGTGATGGTTTATTCCGTTGGGCATATCTCTGGCGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGCGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGGACACTGAGGCTAATATTCAACGGAGAACAAGACCATTTTTCAGGGACTCTCCCAAGTGACTCATATTTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTCGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCCACAGTGCTCCTCAACGTGATGTTTTCAGGGCCAATAACAGGAGCGTCCATGAATCCAGCAAGAAGCTTGGGGCCTGCTATAGTATCAAGGCAGTTCAAGGGGTTATGGATATACATGGTAGCTCCCACGTTTGGTGCAATTGCGGGTGCTCTGGTCTACAATACCATCAGGTTTACAGACAAGCCTCTACGAGAGATCACTAAAAGTGCGTCTTTCCTCAAAGGACAAGGGCGCAATGGTTCGTCTTGA 828 46.98 MAEVSGSTNGHHAVSFNIKDESTAVTSRQEADWISVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGIAIVWGLAVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLASGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVSRQFKGLWIYMVAPTFGAIAGALVYNTIRFTDKPLREITKSASFLKGQGRNGSS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9461180 9462858 + Carg15366-RA Car03g01208 145260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01208 275 PANTHER AQUAPORIN NIP1-1-RELATED 3 268 - -
Car03g01208 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 PANTHER AQUAPORIN NIP2-1 3 268 IPR034294 -
Car03g01208 275 Pfam Major intrinsic protein 33 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01208 275 Gene3D Glycerol uptake facilitator protein. 6 261 IPR023271 -
Car03g01208 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Car03g01208 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01208 Car07g00137 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00326 Car-Chr1:1859616 Car03g01208 Car-Chr3:9461180 5.60E-107 dispersed
Car02g00717 Car-Chr2:5325534 Car03g01208 Car-Chr3:9461180 1.60E-71 dispersed
Car03g01208 Car-Chr3:9461180 Car11g00859 Car-Chr11:5293933 1.33E-75 dispersed
Car03g01208 Car-Chr3:9461180 Car07g00137 Car-Chr7:829521 5.54E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01208 K09874 - csv:101219297 488.034