Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g01213 | ATGAAGAGTCCGGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAATCTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTCGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCCATCTCCAATCCCACTCCCAAATTCGGCCCATTATGCCGTTTGGATCGGAGTTCATACAACATTCTAATCGTAATGGACTGTGTAAAATCCGTTGCTGGGAAAGTTGGGCCTCTTAGGGATGCCGTGCATTACAAGAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCTCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAGCTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTTCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGTGGGTTCTTCGATCTACTCTTTAG | 714 | 48.88 | MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHQSEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPISNPTPKFGPLCRLDRSSYNILIVMDCVKSVAGKVGPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVWVLRSTL | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 9472113 | 9473585 | + | Carg15371-RA | Car03g01213 | 145265 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g01213 | 237 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515 | |
| Car03g01213 | 237 | Pfam | Ankyrin repeats (3 copies) | 38 | 102 | IPR002110 | GO:0005515 | |
| Car03g01213 | 237 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g01213 | Car-Chr3:9472113 | Car11g01213 | Car-Chr11:9864531 | 1.23E-32 | dispersed | |
| Car18g00413 | Car-Chr18:2588834 | Car03g01213 | Car-Chr3:9472113 | 6.95E-80 | wgd | |
| Car20g00218 | Car-Chr20:1256883 | Car03g01213 | Car-Chr3:9472113 | 6.62E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g01213 | - | - | csv:101215728 | 356.681 |