Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01215 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTTAAAAAAGCTTATGAACTTTCTGTTCTCTGTGATGCCGAAGTTGCTCTCATCGTTTTCTCAAGCCGCGGTCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACCATTGATAGATACAAGAAAGCATCCTCAGATTCCTCAAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTTCGAGTTCAGATTGGTAACTTGCAGAATTCAAACAGGAACATGCTGGGTGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTCGAGAGCAAACTTGAGAAAGGAATCAGCAGGATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATTGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTCGAGCTGATGCAATCTCATCCCTACGATCCCCGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCACCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 690 42.03 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9481463 9485752 + Carg15373-RA Car03g01215 145267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01215 229 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g01215 229 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Car03g01215 229 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 218 - -
Car03g01215 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Car03g01215 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 Gene3D - 21 103 IPR036879 GO:0003677|GO:0046983
Car03g01215 229 Coils Coil 132 152 - -
Car03g01215 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Car03g01215 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g01215 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01215 Car13g00458 CCT
Car03g01215 Car07g00131 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00776 Car-Chr1:4759735 Car03g01215 Car-Chr3:9481463 6.14E-60 dispersed
Car03g01215 Car-Chr3:9481463 Car04g00386 Car-Chr4:2188168 2.01E-52 dispersed
Car09g00678 Car-Chr9:3977159 Car03g01215 Car-Chr3:9481463 6.56E-36 dispersed
Car15g01258 Car-Chr15:9821035 Car03g01215 Car-Chr3:9481463 5.45E-42 dispersed
Car18g00016 Car-Chr18:72368 Car03g01215 Car-Chr3:9481463 3.28E-47 dispersed
Car18g00017 Car-Chr18:76206 Car03g01215 Car-Chr3:9481463 1.20E-45 dispersed
Car20g00916 Car-Chr20:9941111 Car03g01215 Car-Chr3:9481463 1.88E-09 dispersed
Car03g00044 Car-Chr3:525038 Car03g01215 Car-Chr3:9481463 1.07E-39 transposed
Car14g00750 Car-Chr14:4195040 Car03g01215 Car-Chr3:9481463 1.29E-14 transposed
Car13g00458 Car-Chr13:6936586 Car03g01215 Car-Chr3:9481463 6.61E-107 wgd
Car20g00220 Car-Chr20:1276126 Car03g01215 Car-Chr3:9481463 8.73E-64 wgd
Car03g01215 Car-Chr3:9481463 Car07g00131 Car-Chr7:809346 3.45E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3207 PF01486 K-box 2.20E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01215 K09264 - csv:101221430 414.846