Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car03g01238 | ATGAAATGTTTAAAGATCTATTTTTGTCGAGCCCTTTTGGATACGGTGGGTTGGGTTGATTCAGAAACAGGCTTGGATGAGTACGAGTCTCTAGCCAGAGCTTTTGAGCTGTCCTCGGATTACTCGAATGAAATTTCGGGGACTCCCATGAATTCCTCCGCTTCCTTCTCCTCCTCTGATGCTGGAGCTGACGAGGATGATTCCCTCAAAGACAAGGATAAGCAGATCAAAGACATGGATGACGGCGGAGAGAGCTCCAAGACCGCGGCTAAATCAAAGAAGAAAGTAGAGAAGAAAGAGAGAGAGCCAAGAGTTGCTTTCATGACCAAGAGCGAGGTCGATCATCTTGAAGATGGGTATCGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGCGCTTATCCTAGGAGCTATTACAGATGCACGACACAGAAATGTGGAGTGAAGAAACGGGTGGAGAGATCGTATGAAGATCCATCCATAGTAATTACGACGTACGAAGGGCAACACAATCACCCAATTCCCGCGACGTTAAGGGGGAACCTGTCGGCAGCGAGCGGCGCGTTTCCGCCGTCCATGTTGGCACCAATGCCGGTGGTCGGTGGCGTGAGGTATCTTCCACAGCTGATGAACAATACTTCCGTCAACAACAACCAGCCCATCGGAGGTGGCGACACCGTTTATTCACAAAGCAGCAGCTTCAACTATCCTTATAACGGACGGCAACAAGACTACGGGCTTCTGCAGGACATTTTACCGACGGCGCCGCCGTTCTTGAACCGACAACCATGA | 795 | 49.69 | MKCLKIYFCRALLDTVGWVDSETGLDEYESLARAFELSSDYSNEISGTPMNSSASFSSSDAGADEDDSLKDKDKQIKDMDDGGESSKTAAKSKKKVEKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHPIPATLRGNLSAASGAFPPSMLAPMPVVGGVRYLPQLMNNTSVNNNQPIGGGDTVYSQSSSFNYPYNGRQQDYGLLQDILPTAPPFLNRQP | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9577419 | 9578542 | + | Carg15396-RA | Car03g01238 | 145290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car03g01238 | 264 | MobiDBLite | consensus disorder prediction | 46 | 107 | - | - | |
Car03g01238 | 264 | MobiDBLite | consensus disorder prediction | 46 | 62 | - | - | |
Car03g01238 | 264 | MobiDBLite | consensus disorder prediction | 63 | 107 | - | - | |
Car03g01238 | 264 | ProSiteProfiles | WRKY domain profile. | 111 | 176 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car03g01238 | 264 | Pfam | WRKY DNA -binding domain | 117 | 174 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car03g01238 | Car07g00110 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car03g01238 | Car-Chr3:9577419 | Car19g00856 | Car-Chr19:8938314 | 3.10E-57 | dispersed | |
Car20g00226 | Car-Chr20:1304429 | Car03g01238 | Car-Chr3:9577419 | 3.10E-43 | wgd | |
Car03g01238 | Car-Chr3:9577419 | Car07g00110 | Car-Chr7:709532 | 2.04E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3208 | PF03106 | WRKY | 1.50E-25 | CL0274 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car03g01238 | - | - | cmo:103484390 | 328.176 |