Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01289 ATGAGGCTTTCAAGTGCTGGTTTTAGTCCTCAGCCTCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCCTGTGCGGGCCCCCTTGTTTCTCTCCCTGCTGTTGGAAGCCGGGTTGTCTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTAGATGCCCATATACCCAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTCACAATGCATGCAGATGTCGAGACGGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCAGTGCTCAAGAACAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGCGCCCCCAGCAAACAACCAACCAATTATTTTTGCAAAACATTGACAGCAAGTGACACGAGTACACATGGAGGATTTTCTGTTCCTCGTCGAGCTGCCGAGAAAGTGTTCCCGCCATTGGACTTTTCTCAGCAGCCACCTGCTCAGGAGTTGATCGCCAGGGATCTACACGAGAATGAATGGAAATTTAGGCATATTTTTCGGGGCCAGCCCAAAAGGCATCTTCTTACGACTGGATGGAGTGTGTTCGTAAGTGCTAAGAGGCTCGTTGCTGGCGATTCGACTCCACATTTATTCGTTCAAACTTATATCATATTTGCAATGCTGGGACGTTTCAGGAATGAGAAGAATCAGTTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCGTCGGTTTTATCCAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTTGCCCATCAGAGTTCATCATACCTCTGGCTAAGTATGTCAAAGCTGTGTACCACACCCGTGTCTCCGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATTCGACCCGGTGGCCGAATTCACACTGGCGGTCCGTCAAGGTTGGATGGGATGAATCTACGGCTGGGGAGAGACAGCCAAGGGTGTCGTTATGGGAGATCGAACCACTTACGACCTTCCCACTGTATCCTTCTCCATTTTCCCTCAGGCTTAAGCGACCGTGGCCAACTGGATTTCCTTCCTTCCATGGTCTAAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTAAGGGGGGATGGTCTAGATCGTGGGATTCAAGCTATGAACTTCCCTGGCATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTATGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTCCAGGCAGCTTCGCTTCTTCAATTTCAACAAACCCAAACTCTTCCGAACAGGCCTACTACTTTCATGCCGCCTCAGATATTGCAGCAGCCTCAACCGACGTTTATTCAGGGCGACGATAACCAACGTCTCTCTCATTCTCAGGCTCAAACCCTGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAATCAGCAGCAGCAGCAGCAGCAGCAAGTGTTTGATCACCAACAAATCCCAAGTACCATCACTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAAGCTCAATCCCTGCAAACGACTCCTCCGTTATGTCGTCAGCAGAGTTTTTCCGATTCAAATCCCAACCATGTGACGAGTCCTATCATTTCACCCTTGCACAGCCTGTTAGGGTCGTTTCCGCAAGACGAATCATCTCAGTTGCTCAATCTTCCTCGAACCAATCCCATGGTACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTCCTCTCTTCTGTAAATTCTCAGTTTGTTCTTCCTCAAGGGGAAAATATGGGGACAACTCAGACGAACATCTCTCAGAATGCTATTTCGTTACCGCCTTTTCCTGGTCGAGAGTGTTCGTTAGATCAAGGGAACACCGATCCACAGAGTAATCTTCTTTTTGGTGTCAATATAGAGCCTTCAAGTCTTCTAATGCAGAGTGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAACTATGTGAATACTGCTGCTTCCAACTTCTCTGCCAATCCGACCGGGACGCCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAGAACACAGGCCAAGTAAACCCATCAACCAGAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTGGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAATTACGCAGTGAGCTTGCGCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACGTTCTTCTTCTCGGGGACGATCCCTGGCCCGAGTTCGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACAAGGCCTAGAGCTGTTGAAATCGGTCCCAATTCAGAGGCTCTCGAATGGCAGCTGTGATAACTATGCCAACAGACAGGAGTCGTCCAGAAACTTAAGTACCGGGATAACTTCTGTCGGGTCGCTCGAGTACTAA 2721 48.29 MRLSSAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSTPHLFVQTYIIFAMLGRFRNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPLYPSPFSLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQAMNFPGIGVAPWMQPRLDASMVGMQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQTLPNRPTTFMPPQILQQPQPTFIQGDDNQRLSHSQAQTLPTVLQQEIKHQTFNNQQQQQQQQVFDHQQIPSTITTMSQFSSASQSQAQSLQTTPPLCRQQSFSDSNPNHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMVHSSTWPSKRAAVDPLLSSVNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNTDPQSNLLFGVNIEPSSLLMQSGMPNLRGICSDSDSTAIPFSSNYVNTAASNFSANPTGTPSNCIEDSGFLQSPENTGQVNPSTRTFVKVYKSGSLGRSLDISKFSSYHQLRSELAHMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLKSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9838753 9844437 - Carg19296-RA Car03g01289 145341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01289 906 Pfam B3 DNA binding domain 127 210 IPR003340 GO:0003677
Car03g01289 906 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car03g01289 906 ProSiteProfiles PB1 domain profile. 772 856 IPR000270 GO:0005515
Car03g01289 906 MobiDBLite consensus disorder prediction 561 594 - -
Car03g01289 906 ProSiteProfiles B3 DNA-binding domain profile. 127 243 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01289 Car18g00462 CCT
Car03g01289 Car13g00401 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01289 Car-Chr3:9838753 Car04g02184 Car-Chr4:17745726 0 dispersed
Car12g01298 Car-Chr12:11997221 Car03g01289 Car-Chr3:9838753 4.63E-30 dispersed
Car07g00075 Car-Chr7:485066 Car03g01289 Car-Chr3:9838753 0 transposed
Car13g00401 Car-Chr13:6546260 Car03g01289 Car-Chr3:9838753 0 wgd
Car18g00462 Car-Chr18:2973511 Car03g01289 Car-Chr3:9838753 0 wgd
Car03g01289 Car-Chr3:9838753 Car07g00074 Car-Chr7:482444 4.45E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3212 PF02362 B3 1.70E-17 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01289 - - csv:101210406 1618.59