Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g01306 | ATGACTTCCTCTGTCCACGATTATTCTGATAATGGCGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCGGGACATTCTATGGCGCCCCCTGTTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA | 618 | 42.56 | MTSSVHDYSDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPVYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN | 205 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 9982414 | 9988812 | - | Carg19313-RA | Car03g01306 | 145358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g01306 | 205 | MobiDBLite | consensus disorder prediction | 129 | 148 | - | - | |
| Car03g01306 | 205 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Car03g01306 | 205 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 113 | 168 | IPR001289 | GO:0003700|GO:0006355 | |
| Car03g01306 | 205 | MobiDBLite | consensus disorder prediction | 162 | 205 | - | - | |
| Car03g01306 | 205 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 116 | 136 | IPR018362 | GO:0003677|GO:0016602 | |
| Car03g01306 | 205 | MobiDBLite | consensus disorder prediction | 170 | 205 | - | - | |
| Car03g01306 | 205 | ProSiteProfiles | NF-YA/HAP2 family profile. | 111 | 171 | IPR001289 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g01043 | Car-Chr2:7268882 | Car03g01306 | Car-Chr3:9982414 | 1.42E-38 | dispersed | |
| Car03g01306 | Car-Chr3:9982414 | Car17g00912 | Car-Chr17:7508377 | 1.91E-39 | dispersed | |
| Car03g01306 | Car-Chr3:9982414 | Car07g00054 | Car-Chr7:347042 | 1.25E-128 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3214 | PF02045 | CBFB_NFYA | 4.20E-26 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g01306 | K08064 | - | csv:101205549 | 373.629 |