Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01306 ATGACTTCCTCTGTCCACGATTATTCTGATAATGGCGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCGGGACATTCTATGGCGCCCCCTGTTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 618 42.56 MTSSVHDYSDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPVYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9982414 9988812 - Carg19313-RA Car03g01306 145358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01306 205 MobiDBLite consensus disorder prediction 129 148 - -
Car03g01306 205 MobiDBLite consensus disorder prediction 1 35 - -
Car03g01306 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Car03g01306 205 MobiDBLite consensus disorder prediction 162 205 - -
Car03g01306 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Car03g01306 205 MobiDBLite consensus disorder prediction 170 205 - -
Car03g01306 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01306 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01043 Car-Chr2:7268882 Car03g01306 Car-Chr3:9982414 1.42E-38 dispersed
Car03g01306 Car-Chr3:9982414 Car17g00912 Car-Chr17:7508377 1.91E-39 dispersed
Car03g01306 Car-Chr3:9982414 Car07g00054 Car-Chr7:347042 1.25E-128 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car20g00071 CST 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 1.1e-55 214.2
Car02g01043 CST 18 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 3.1e-55 212.6
Car10g00841 . 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 1.6e-48 190.3
Car02g01043 CST 105 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 1.9e-50 196.8
Car20g00071 CST 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 3.4e-47 186.0
Car10g00841 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.5e-45 178.7
Car03g01306 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.7 5.1e-49 191.4
Car07g00054 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.7e-47 186.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3214 PF02045 CBFB_NFYA 4.20E-26 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g01306 Car_Chr03 FPKM 5.190132 4.45809 0.332842 0.207523 0.0 0.267517 0.0 0.171861 0.218471 0.306902