Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car03g01373 | ATGGATGCGAGTTCTATAGATGAAAGCAGGGGCAGCGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCCCCAGCGCCTGGGATGCCCCATGAGGCGGAGTCTCGGAAGCTTCCGTCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAATGGGCGATGGGGGGCCCAGATCTACGAGAAGCATCAAAGAGTCTGGCTGGGGACATTCAACCAAGAACACCACGCTGCCAACGCCTACGACATCGCTGCCCTGCGGTTCCGTGGCCGCGACGCCGTCACGAACTTTAAATCCCTGGACGACGAGGATGATAATGATGCGATGGAGGGCGAGTTTCTGAACTCCCACTCCAAGCTGGAGATCGTGGACATGCTCCGGAAACACACGTACAATGAGGAGCTGGAGCAGAGCAAGCGGCAGCGTGGGGCCATAGCGGCGGCTAATACGGCTGTCCACCATTCGGGGGTTGATTCGAAGAGGGAAGTGTTGTTTGAGAAAACGGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGGTTCAGGGAAAGGAATGCTTCTGAACTTGGAGGATATGGGAGGGAAAGTTTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAAGGGTGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTTCGGTTCCTCCGCTCCACCGGGGCGGATAAGCAGCTTTACATCGATGGAAAGGCGATAAGTGAAGGGGGGGTGAAGGCGGTTCATGTGGTCAAGCTTTTTGGAGTCAATATTCTGGAAGTGCCGCTGCCGGTGGGTCGTTGCGGCGGGGAGCCAAAGAACCAAGGGGTATTATTGGAATTGCCACCTTCCAAGAAGCAGAGAATAATCAAAGCTTTGTAA | 975 | 55.49 | MDASSIDESRGSDSTSISPVTPLLFHSSPAPGMPHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHHAANAYDIAALRFRGRDAVTNFKSLDDEDDNDAMEGEFLNSHSKLEIVDMLRKHTYNEELEQSKRQRGAIAAANTAVHHSGVDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGADKQLYIDGKAISEGGVKAVHVVKLFGVNILEVPLPVGRCGGEPKNQGVLLELPPSKKQRIIKAL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10390971 | 10391945 | - | Carg24633-RA | Car03g01373 | 145425 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car03g01373 | 324 | ProSiteProfiles | B3 DNA-binding domain profile. | 168 | 270 | IPR003340 | GO:0003677 | |
Car03g01373 | 324 | Pfam | B3 DNA binding domain | 168 | 262 | IPR003340 | GO:0003677 | |
Car03g01373 | 324 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Car03g01373 | 324 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Car03g01373 | 324 | Pfam | AP2 domain | 46 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Car03g01373 | 324 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car03g01373 | Car-Chr3:10390971 | Car04g01569 | Car-Chr4:9094245 | 7.92E-128 | dispersed | |
Car03g01373 | Car-Chr3:10390971 | Car04g01958 | Car-Chr4:13539041 | 2.00E-171 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3221 | PF02362 | B3 | 2.20E-27 | CL0405 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car03g01373 | K09287 | - | csv:101206328 | 484.567 |