Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00004 ATGGGTCTTCATAGCTTCTTCTTAATCCTTCTTCCCGTCTCTTTCTTCTTCCAATTCCACCTCTCCCTTTCCCAGAACCCCACAATTTGCCATTCCGATGACTTCAAGGCCTTGCAGGACTTCCACAGCGCGTTTGATTCCCAAATCGACGGATGGCACACCGGCTGTTCGACGAATTGCTGCAGTTGTATTGGCCTCACTTGTGACTCTTCTGGACGGGTTGTGAAGATGGAGCTTGGTGGTAGGAAGATCAAGGGTCAGTTACCTTACTCGATTGCAAGATTGGAACACCTCAGAGTTCTCAATCTGTCTTCTAATTTTCTCAATGGGTCCATTCCCTTGGCTCTGTTTCATCTACCATACTTGGAAGTTCTTGATCTCAGTTTCAACGATTTGGTTGGGAGCATCTCATCAGGTACCATTAATTTGCCTTCCATCCGGCTTCTTAACGTTTCTCATAATAACTTTAATGGAAGTCTTCCACTTGGGGTTTGTGTTAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATCATTTCACTGGTATGTTTCCTGTTGAGCTTGCTGAATGTGTTTCCTTGAAGAGACTGTTTGTGGAATCGAATTTACTCAGCGGTGGGATACCTGATGAGGCTTCTGGATTGAGGAAATTGACACATTTTTGTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATGGTGTTGTTGGGAATCTCACAAACCTTGTTCGATTGGATTTGTCATCTAATGGGTTTTTCGGCGACATTCCGGATGTTTTTTATAACTCTGTGAATTTGAGTTATTTTGCTACCGAATCTAATAGGTTTAGCGGAAAGATTCCCAGTTCTTTGTCAAACTCTGCTTCACTCACTGTCCTAAATTTGAGGAACAATTCAATATGGGGAACTCTTGATCTCAATTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCACTAATAGGTTTCATGGCTCTATACCAAGTAATCTTCCCTCTTGTACTCAACTGAGAAGTATAAACCTTGCTAGGAACAACCTTGGCGGTCAGATCCCCGAAAGCTTTAGGAATTTTCAGAGCCTCTCGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCGTCTGCTCTTAACATCTTGCAACATTGCAAGAATTTGAGTACAATGGTCCTTACCTTTAATTTTCGTGGTGAAGTGTTGGAAGATGATCCTAACTTGCATTTCAAGAGCCTCCAAGTTTTTATAATTGCTAATTGTGGGTTGAAGGGAATCATACCCCAGTGGTTGAGAGGTTCTAGGAAGCTGCAGTTGTTGGATTTGTCGTGGAACCGTCTTGGAGGAACTATTCCACCCTGGTTCAGCGAGTTGCAGTCCTTGTTTTACTTGGATTTATCTAATAATTCATTCACTGGATATATCCCTACAGAGATGACTAAAATGAGGAGTTTCATTGACAGAAAATTCTCGCCCGATGAACCTTCCTCACTAGATTTTTCCCTTTTTGTGACAAGAAATGGAACTGGATTGCAGTACAATCAAGTATGGAGGTTTCCACCCACTTTGAATCTCAGTCTCAACAATCTCAGTGGGCCAATCTCGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATCTGAAAATCAACAGCCTTTCGGGATCGATTCCGAGCAGCCTTTCGGGGATGGTTAGCTTAGAGACTTTGGATCTTTCTCACAACAATCTTTCAGGAATAATTCCTCCTTCACTGCAAAATCTCAATTTTTTGTCTAAGTTCAGTGTTGCATACAATCATTTACATGGGGCAATTCCTGAAGGAGGTCAGTTTCATAGCTTTGATAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCGAGACAGTATATGTACGTCAATTGATCCTCTCGTGCCATCCCACAAATCAAGAATGGATATAGGGAGTATTGTAGGTATTGTTATCGGTATTGTGTTCGGGATCATGTTTCTTATAACTCTTATGGTTGTGTTTATGCTTCGGGCTCCTCGGGGAAGAGTTGGAGATCCCGAAAATGAAGTGTCTAATACTGACGATAAAGACTTGGAGGAAGGCAGGTCAGGATTGGTAGTTCTGTTCCAAAACAATAACAATGGAAGCCTCTCGCTGGAGGACATTTTGAAATGGACAAATGATTTTGATCAAGAAAATATCATAGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCAACCCTTCCTGACGGCAGAAAGGTTGCCATAAAACGGCTATCTGGTGATTGTGGTCAAATGGACAGAGAATTTCGGGCGGAAATCGAAACGCTTTCTGGTGCTCGGCATCAGAATCTTGTTCTTCTTCTAGGGTATTGTTTGTATAAAAATGACAGGCTTCTGATTTACTCTTTCATGGAGAATGGTAGCTTAGATTACTGGCTACATGAAAAACTTGATGGTCCGTCTTGCCTCAATTGGGATACCAGACTGCAGATTGCTCGGGGGGCAGCTGCAGGGCTGGCTTATTTGCATCAATCCTGTGAACCTCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAACTTCAAAGCTCACTTAGCCGATTTTGGTCTTGCCAGGCTCATTCTTCCCTATGATTCCCACGTCACGACTGATCTTGTTGGTACACTGGGCTACATTCCACCAGAGTACGGGCAATCCTCGGTGGCAACTTACAAAGGGGACGTGTATAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACTGGTAAAAGACCAATCGATATGTGCAGACCGAAAGGAGTTCGAGACTTGATCTCTTGGGTGTTTCAAATAAGGGAAGACAGAAAAGTAAGTGAGGTGTTCGATCCATTAATATACAATAAGCAGCATGAGACAGCGATGTCTGAAGTTCTTGATATAGCATGCCTTTGCTTATGCAAGGTACCTAAAGAGAGGCCTTCAACTCAACAGCTGGTTTCTTGGCTTGATAAA 3003 41.96 MGLHSFFLILLPVSFFFQFHLSLSQNPTICHSDDFKALQDFHSAFDSQIDGWHTGCSTNCCSCIGLTCDSSGRVVKMELGGRKIKGQLPYSIARLEHLRVLNLSSNFLNGSIPLALFHLPYLEVLDLSFNDLVGSISSGTINLPSIRLLNVSHNNFNGSLPLGVCVNSSRIEILNLGFNHFTGMFPVELAECVSLKRLFVESNLLSGGIPDEASGLRKLTHFCVQNNKLSGSLNGVVGNLTNLVRLDLSSNGFFGDIPDVFYNSVNLSYFATESNRFSGKIPSSLSNSASLTVLNLRNNSIWGTLDLNCSAMKSLVTLDLGTNRFHGSIPSNLPSCTQLRSINLARNNLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNILQHCKNLSTMVLTFNFRGEVLEDDPNLHFKSLQVFIIANCGLKGIIPQWLRGSRKLQLLDLSWNRLGGTIPPWFSELQSLFYLDLSNNSFTGYIPTEMTKMRSFIDRKFSPDEPSSLDFSLFVTRNGTGLQYNQVWRFPPTLNLSLNNLSGPISPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNNLSGIIPPSLQNLNFLSKFSVAYNHLHGAIPEGGQFHSFDNSSFEGNNFCVRDSICTSIDPLVPSHKSRMDIGSIVGIVIGIVFGIMFLITLMVVFMLRAPRGRVGDPENEVSNTDDKDLEEGRSGLVVLFQNNNNGSLSLEDILKWTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSGARHQNLVLLLGYCLYKNDRLLIYSFMENGSLDYWLHEKLDGPSCLNWDTRLQIARGAAAGLAYLHQSCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDSHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGVRDLISWVFQIREDRKVSEVFDPLIYNKQHETAMSEVLDIACLCLCKVPKERPSTQQLVSWLDK 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12260 15262 + Carg27081-RA Car04g00004 145429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00004 1001 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515
Car04g00004 1001 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515
Car04g00004 1001 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515
Car04g00004 1001 ProSiteProfiles Protein kinase domain profile. 728 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00004 1001 Pfam Protein kinase domain 729 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00004 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Car04g00004 1001 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Car04g00004 1001 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00004 Car-Chr4:12260 Car04g00919 Car-Chr4:5257114 0 dispersed
Car04g00004 Car-Chr4:12260 Car18g01139 Car-Chr18:11318917 1.94E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88753 PF00069 Pkinase 9.90E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00004 - - bhj:120069286 1638.62