Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00041 ATGAAACTTATGGTTTTGAGGTACTCTCCATTTTTCTTGGTCTTGTTGGTTTGTGTACTGCCTCTGGTTCAAGCTGGAGATGTAGAAGCTCTGTTGGCATTGAAAGCATCTCTCGACCCTGGGAACTCGCTGCCATGGCGAGGAAGTTCCATCTGCAACTGGCAAGGCGTAAAAGAGTGCACAAATGGACGGGTAACTAAGCTCGTTTTGGAACATCTAAACCTCTCTGGTGTTCTTAACGACAAAATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTTTCTGGTCTCGTTAATCTCAAATCCCTCTATCTAAGCGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCGACCTTCACCGCTTGAAGGTCGTCGTCGTTTCCGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGTGGCTCCATCCCTCCTTTCAAGCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGCGACATCCCAGTAACCCCCACCTTGGTCCGCTTCAACGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAAGCCCTGTGGAAATGTTGCCATTGCGCCATCATCGAGTCCCTCTTATCCGCAAATCACTGGCTCAAGCTCGTCTTCAAGACGCACCAAATTGGTCAAGATAATAGTAGGAAGCGTTGGTGGGTTTGTCGGACTTCTATTGATCATTCTTCTACTGTGTATGATTTGCAAATGCAGGGAAAGAAAGAGCCTATCCGAGGTCAGAAACAAAGGAATCGACGACGAGGGGATGAGGATGGAGGAAGCATCTGGGACCTCCGCCGGCGGCAGAGGAGGTAATAATGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGAAGCCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATGGGAAGCACATACAAGGCTGTGATGGAATCTGGGTATATTGTTACAGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAAGAACGCTTGCTGGTATATGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGGATCAAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCTGAAGACTTGGCCAACGGTTTGTTGTATATCCACCAGAACCCTGGTTTAACCCATGGAAACCTGAAATCCTCAAATGTACTACTAGGATCTGATTTCGAGTCATGTCTTACTGATTACGGACTTAACTTATTCCGAGATCCCGATTCACTTGAAGAATCTAGTGCAACTTCACTCTTTTACCGAGCTCCTGAATGCCGTGACACCCGTAAGCCAACCACACAACAAGCTGACATCTATAGCTTTGGTGTTCTTCTGTTGGAGCTTCTAACAGGAAAAACGCCATTTCAAGATCTAGTCCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAATTCCGTTAGAGAAGAGGAGACAGAGTCTGGGGATGATCCTGCATCTGGGAACGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTATCGCTAATGCCACAAAACCGACCAATGATGAGAGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGCTGGTCTGATATTGTCCAGAGTTTGCCCAGGGATGAACATTTAGGTATTTGA 1977 47.19 MKLMVLRYSPFFLVLLVCVLPLVQAGDVEALLALKASLDPGNSLPWRGSSICNWQGVKECTNGRVTKLVLEHLNLSGVLNDKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISDLHRLKVVVVSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFKQTSLRFFNVSNNRLSGDIPVTPTLVRFNVSSFSGNLELCGEQIQKPCGNVAIAPSSSPSYPQITGSSSSSRRTKLVKIIVGSVGGFVGLLLIILLLCMICKCRERKSLSEVRNKGIDDEGMRMEEASGTSAGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTMGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEESSATSLFYRAPECRDTRKPTTQQADIYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPMMREVLKMIRDTRAEAQISSNSSDHSPGSWSDIVQSLPRDEHLGI 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 225321 228872 - Carg21989-RA Car04g00041 145466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00041 658 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00041 658 MobiDBLite consensus disorder prediction 629 646 - -
Car04g00041 658 MobiDBLite consensus disorder prediction 629 658 - -
Car04g00041 658 MobiDBLite consensus disorder prediction 568 589 - -
Car04g00041 658 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00041 658 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Car04g00041 658 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00041 Car-Chr4:225321 Car04g00922 Car-Chr4:5282794 0 dispersed
Car07g00687 Car-Chr7:3517308 Car04g00041 Car-Chr4:225321 3.14E-95 dispersed
Car04g00041 Car-Chr4:225321 Car03g00870 Car-Chr3:6958315 2.29E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88754 PF00069 Pkinase 1.50E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00041 - - cmax:111483350 1211.82