Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00042 ATGGTTCAGATATTCTACTGTAAATGCGGGTTTAGTGTTTTTCTCTCGTTAGGGATTCTCATGGCAATGCCATCGGGAAATGTGGGTGTTTCCGATAAAGTTCCGTTTCAGAGCGGTGGCGGAGTTGCGGTGAGCGGCGGTGGAGGCAATGGCGGTGGCGAGATCCATCAGCACCGCCCCCGTCCCTGGTATCCTGATGAGCGTGATGGGCTTATCTCATGGTTCCGAGGCGAATTTGCTGCTTCGAATGCGATCATTGATGCCCTTTGCCATCATTTGCGTGCTGTGGGAGAGCCTGGGGAATATGATGTTGTTATTGGGTGTATACAGCAACGGCGGTGCAATTGGACGCCGGTGCTTCATATGCAGCAGTACTTTTCAGTGGCAGAAGTGATGTTTGCACTTCAGCAGGTCACCTCTAGAAGGCAGCAGAGGTTTGTTGATCCTATGAAAGTGGGGTCGAAGTTGTTTAGGAGACCTGGGCCAGCATTTAAGCAGCAGCATCAGCAGCATGGCCATCGCGCTGAAGCCACAGTCAAGGAAGAGATGGTCACTTGTGCAGAGTCTTGTAATGGTGGGAATTCTTCAAGTTTTGTAGGCTCTAGGAAGGTTGAGCAAGTAAGTAATACATGCGAGGAAAGTAATGCAATGGGGGAGGATGGAAAATTGAACGATAAAGATTCAGGGTCAGCTGAGGACATAAAAGATACTCATGGGAAGGACCAAAGTAATAGCAAACCCAAGTGTGCAGAAAATTTAAAAGACAATGCAAGCAATAAAGAATCTCAAGTTGAACCTACTGATGATGGGTGTTCTTCAAGTCAAAGAGATAAGGAGCTGCAGTCTGTTCAAAGCCGGAATGGAAAGCAGTATGCTGCCACAGCCCCAAGAACCTTTGTTGCCAATGAGATATTTGATGGAAAGACGGTTAATGTGATGGATGGATTGAAATTGTATGAAGAATTATTGGATGATATTGAGGTTTCAAAGCTTCTTTCGTTGGTGAATGATTTGAGGGCTTCTGGAAAGAGAGGGCAACTCCAAGGCAAAATAGAATCCATCCCCTCATTGCTTCAAGATCTCATTGATTGCTTGGTTCGGGAGCAAGTGATGACAGTGAAACCAGATTCCTGCATCATTGACTTTTATAACGAGTATTCGTTAGGTGATCATTCTCAGCCTCATGTCTGGCCACCATGGTTTGGGAGGCCTGTTGGTGTCCTCCTTTTGACTGAATGTGAAATGACCTTTGGTAGAGTAATTGGTTCAGACCATTCTGGCAATTATAGAGGGGCTAAGACATTGTCTCTTGCACCGGGGAGCCTCCTTGTGGTGCAAGGAAAATCTGCAGATTTTGCTAAGCATGCAATTCCTGCTATGCGCAAGCAACGGATACTTGTTACCTTGACCAAATCACAACCAAATAGAGCAGGACCAGCTGATGGGCAACGCACATCTTTGACTGTAGGATCATATTCCAGTTGGGGCCCTCCATCTGCTAGATCACCCAATGCTCGTTCTTGCCCGGGACAGAAGCATTACCCTATGGGTCCATCGACAGGCGTTCTACCTGTGCCACCCATTCGTCCCCAATTGCCACCACCAAATGGCATCCCACAAATAATGGTGGCTCCTGTAGCACCACCACCTATGCCTTTCCCTCCCGTGCCAATTCCAACTGGTCCACCTGCATGGCCTGCTGCTCATCCAAGGCATCCTCCGCCTCGTCTCCCTGTTCCTGGCACTGGAGTATTCCTTCCTCCAGGTTCTTCCAGTTCTCCATCTCCTCAACAGATGCCAAACTCCGCAGTGGAGACGAGTTCCCTTGCAGAAAAGGAAAATGGTCCGACGGAATCTGATCACAATGCAGGTGCTTCTCCAGGGGAAAAATCTGAATCAAAGCCTCAAAGACAAGAATGCAATGGAAGCATGGATGGAAGTGGGAGTTGTAAAAAGACGGAGGAAGAACGAGCAAAGCAGCAGGAGGAGGAGGAGAAAGGTGAGAACGTAGAGGGCCAAAATGCAGGAGGTGGAGAAGCTTAA 2043 48.12 MVQIFYCKCGFSVFLSLGILMAMPSGNVGVSDKVPFQSGGGVAVSGGGGNGGGEIHQHRPRPWYPDERDGLISWFRGEFAASNAIIDALCHHLRAVGEPGEYDVVIGCIQQRRCNWTPVLHMQQYFSVAEVMFALQQVTSRRQQRFVDPMKVGSKLFRRPGPAFKQQHQQHGHRAEATVKEEMVTCAESCNGGNSSSFVGSRKVEQVSNTCEESNAMGEDGKLNDKDSGSAEDIKDTHGKDQSNSKPKCAENLKDNASNKESQVEPTDDGCSSSQRDKELQSVQSRNGKQYAATAPRTFVANEIFDGKTVNVMDGLKLYEELLDDIEVSKLLSLVNDLRASGKRGQLQGKIESIPSLLQDLIDCLVREQVMTVKPDSCIIDFYNEYSLGDHSQPHVWPPWFGRPVGVLLLTECEMTFGRVIGSDHSGNYRGAKTLSLAPGSLLVVQGKSADFAKHAIPAMRKQRILVTLTKSQPNRAGPADGQRTSLTVGSYSSWGPPSARSPNARSCPGQKHYPMGPSTGVLPVPPIRPQLPPPNGIPQIMVAPVAPPPMPFPPVPIPTGPPAWPAAHPRHPPPRLPVPGTGVFLPPGSSSSPSPQQMPNSAVETSSLAEKENGPTESDHNAGASPGEKSESKPQRQECNGSMDGSGSCKKTEEERAKQQEEEEKGENVEGQNAGGGEA 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 230738 234524 + Carg21990-RA Car04g00042 145467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00042 680 Coils Coil 650 671 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 564 582 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 209 289 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 218 248 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 586 648 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 649 670 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 473 518 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 564 680 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 249 289 - -
Car04g00042 680 MobiDBLite consensus disorder prediction 473 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00042 - - - cpep:111785549 946.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00042 Car-Chr4:230738 Car08g00324 Car-Chr8:2093709 1.51E-57 dispersed
Car04g00042 Car-Chr4:230738 Car04g00928 Car-Chr4:5315731 1.51E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00042 Car_Chr04 FPKM 20.734463 20.6691 23.901054 23.508642 29.466257 28.32073 33.963448 40.365128 38.77644 41.738934