Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00044 ATGGCGTTCAAACGAAACTTCAACATAATGGCGAGGCCAGTCACTTTGTTGGGTCATTTGGTGGCCATATCTATCGCAGTCTTGATTCTTGTATGGATCCTCCATTTCAGAGAAGGGGTTGCTTTCAAATCAGATAACAAGCTCAAGATTCTAAATCTGCATGTGCTTTTAATGGTGATTGGACTCGTCCTATTTGGAGGGCAAGCTATAATGGCATACAAGTCAATACCAGCAAAAAAATACTGGAGAAAAGTGGTGCATTTGGGGTTGCATGCAATAGCATTAGCTGCTGCAATTTTTGGGATTTGTATGAGTTTCAAGTTTCACCATGACATCCAGTTGACGAATCTTGTTTCTTTGCACTCTTGGTTTGGTTTGATCACCGTTTGCTTGTATGGTCTACAGTGGGTAGTAGGCTTCTTTGCGTACTTCTTCCCCGGAGCAGAATCAAGGAGGAGAGCCAGCCTAATGCCATGGCACGTTTACTTTGGAATATTCGTCTTCTTAATGGCAACTTGCACTGCTGAATTAGGGCTGCTTCAAAGCTTGGACACTTGGTTTTTGTTGGGGCACACCCAAGAAAACCTTATCATCAACTTCACAGGTCTTCTCATTTTTCTCTATGCAGCCACGGTCGTTCTCACTGTCATTCTTCCACCCCTTTATTAG 669 43.2 MAFKRNFNIMARPVTLLGHLVAISIAVLILVWILHFREGVAFKSDNKLKILNLHVLLMVIGLVLFGGQAIMAYKSIPAKKYWRKVVHLGLHAIALAAAIFGICMSFKFHHDIQLTNLVSLHSWFGLITVCLYGLQWVVGFFAYFFPGAESRRRASLMPWHVYFGIFVFLMATCTAELGLLQSLDTWFLLGHTQENLIINFTGLLIFLYAATVVLTVILPPLY 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 239928 240829 + Carg21992-RA Car04g00044 145469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00044 222 ProSiteProfiles Cytochrome b561 domain profile. 17 217 IPR006593 -
Car04g00044 222 Pfam Eukaryotic cytochrome b561 53 182 IPR006593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00044 K08360 CYB561; transmembrane ascorbate-dependent reductase [EC:7.2.1.3] - zju:107429205 244.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00044 Car-Chr4:239928 Car15g00204 Car-Chr15:1108665 4.83E-52 dispersed
Car04g00044 Car-Chr4:239928 Car04g02080 Car-Chr4:16950821 3.59E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g540 . Blo16g01197 . Bda11g01301 . . . . . . . Cma04g00038 . Car04g00044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012392 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00044 Car_Chr04 FPKM 10.699317 8.411065 17.23967 17.358391 8.773735 10.352633 11.229062 23.162182 21.130432 27.759653