Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00045 ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCAGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTCGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA 591 51.61 MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 243721 245638 - Carg21993-RA Car04g00045 145470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00045 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Car04g00045 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Car04g00045 196 PANTHER - 1 191 - -
Car04g00045 196 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Car04g00045 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Car04g00045 196 SMART HOX_1 63 125 IPR001356 GO:0003677
Car04g00045 196 Gene3D - 57 127 - -
Car04g00045 196 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Car04g00045 196 CDD homeodomain 64 122 IPR001356 GO:0003677
Car04g00045 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Car04g00045 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Car04g00045 196 Coils Coil 134 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00045 Car-Chr4:243721 Car15g00884 Car-Chr15:5258409 3.65E-71 dispersed
Car04g00045 Car-Chr4:243721 Car04g02028 Car-Chr4:16323750 1.95E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3226 PF00046 Homeodomain 1.10E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00045 K09338 - csv:101222713 346.665