Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g00045 | ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCAGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTCGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA | 591 | 51.61 | MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 243721 | 245638 | - | Carg21993-RA | Car04g00045 | 145470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g00045 | 196 | Pfam | Homeobox associated leucine zipper | 121 | 155 | IPR003106 | GO:0006355|GO:0043565 | |
Car04g00045 | 196 | ProSiteProfiles | 'Homeobox' domain profile. | 61 | 121 | IPR001356 | GO:0003677 | |
Car04g00045 | 196 | PANTHER | - | 1 | 191 | - | - | |
Car04g00045 | 196 | SMART | halz | 121 | 164 | IPR003106 | GO:0006355|GO:0043565 | |
Car04g00045 | 196 | Pfam | Homeodomain | 65 | 119 | IPR001356 | GO:0003677 | |
Car04g00045 | 196 | SMART | HOX_1 | 63 | 125 | IPR001356 | GO:0003677 | |
Car04g00045 | 196 | Gene3D | - | 57 | 127 | - | - | |
Car04g00045 | 196 | SUPERFAMILY | Homeodomain-like | 51 | 122 | IPR009057 | - | |
Car04g00045 | 196 | CDD | homeodomain | 64 | 122 | IPR001356 | GO:0003677 | |
Car04g00045 | 196 | ProSitePatterns | 'Homeobox' domain signature. | 96 | 119 | IPR017970 | GO:0000981|GO:0006355 | |
Car04g00045 | 196 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 | 1 | 191 | - | - | |
Car04g00045 | 196 | Coils | Coil | 134 | 157 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g00045 | Car-Chr4:243721 | Car15g00884 | Car-Chr15:5258409 | 3.65E-71 | dispersed | |
Car04g00045 | Car-Chr4:243721 | Car04g02028 | Car-Chr4:16323750 | 1.95E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3226 | PF00046 | Homeodomain | 1.10E-16 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g00045 | K09338 | - | csv:101222713 | 346.665 |