Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00049 ATGTCACTCAAGGAAAGCCATGTGGAGGCAAAGGAGGCGATGGTGTATAGCTACACCAAAAGCTTCAATGCTTTTGCAGCCAAGCTTACAGAACAGGAAGCCAACGCATTGTCAAAGAGGGGCGATGTGACTCATGTGATCCCGAACAGACGTAGAGAGATTCAAACCACCCGATCGTGGGACTTCATTGGATTTTCTTCCAATGCAAAAAGACGGCCCAACCGGGAGTCTAATATTATTGTCGGTTTATTTGATACCGGGATCTCCCCAACAGCCGATAGCTTTAAAGATGATGGGTTTGGTCCTCCACCTAAAAAATGGAAAGGCACCTGCCAAAAATCTGCCAATTTCTCTGGTTGCAACAACAAACTCATTGGAGCTAGATATTTCATGCTCGAAGGCAGCGCTGGACCCCAAGACATTATGGCACCGGTAGATGTCACAGGCCATGGAACGCACACGTCCTCAACAGCGGCGGGCAATGTAATTGCTGGAGCCAGTCTCTCCGGTCTGGCCGAAGGAACAGCCCGTGGTGGTGTGCCATCTGCAAGAGTTGCCATGTACAAGGTCTGCTGGGTCGGTGTTGGGTGCTCTGATATGGATATTCTGGCTGCCTTCGACGCTGCCATACACGATGGCGTTGATGTCATTTCGATATCGATAGCAGGCACCGGCTTCAGCAATTACTCTGAGGACGTGATGGCCATTGGCGCCTTTCAGGCCATGCAGAAGGGCATCATCACTGTGGCTGCCGCTGGCAACACTGGTCCGGCAGCTGGCAGTGTCGTCAACACCGCGCCGTGGATTGTGACGGTTGCTGCCAGTACGATTGATCGGGAATTTGTCACCAAGTTGGTGTTGGGCAATGGGTGGAACATCTCTGGAGTAGGAATAAACTTGTTCAATGAACAACCAAAAATGTACCCTTTGGTTGATGGAGGCGATGTGGCCAAGAATCCAGGGGACAAAACCAGTGCGAACTTTTGCATGGAGGGTTCACTTGATCCAACCAAGGCCAATGGCAAGCTTGTGTTCTGTCAATTGATGATCTGGGGGGCTGATTCCGCTGTCAAAACAGCTGGTGCCCATGGCGCTGTGATTCAAAGTGATCAGTACTATCTTGATCATACCGATCTCTTCATGGTTCCAGCCACCTTGGTTAATAGCACCATTGGTCAAACCATTGAAGCCTACATCAAGTCCACAAAAACACCGACGGCAATGATATACAGAACAGTGCAACGGCAAGCAGCTGCTCCATTCGTGGCTTCCTTCTCGGCTAGAGGCCCAAATCAACGCTCCCGCCTCATTCTAAAGAGCCCGGATGGGGAATTCGGGTACGGTGCGGGACTTCTAAATCCAGATAGAGCCAGAGAACCGGGGCTAATCTACGAGGCGGACAAAATGTCGTACATCCAACACCTTTGCAACCAAGGGTACAACGCATCTTCAATTTCCATCCTCACCGGAGCAGGGCCCGTAGACTGCTCCACTCTAATCCCCGCCCAGGGTTACGACTCTCTCAACTACCCAACCTTTCAACTCAGCCTCAATAATACCCGACACCCGACAACCGCCGTCTTCTGGCGACAGGTCACCAATGTTGGTCGTCCTACCTCCGTCTACAAGGCTACCATCACGGCTCCCCCTGGGGTCGAGATCACAGTGGAGCCAACGTCTCTGTCGTTCTCGTCTTTGCAGCAGACCCAGAGCTTTAAGGTGGTTGTGAAGGCCAATCCTCTGCCGCCACAAAACATGGTATCTGGTTCGCTTACGTGGGCTTATGCTAACTATGTTGTCAGAAGTCCGATTGTTATTTACACACATGAGGACTTTGGAGATAATGAGGTATGCCTGTTTTTGTCAATATTCCTTGCAACCTCCACTGCTGCTGTGGATCAACAATCCTACATTATTCACATGGACACCACCAAGATGGCCGCCCCCACCCCCGAACAATGGTACACAGCCTTGATTGATTCTATCAATGAAATCTCATCTTTAGAGGACCAAGAAGAAGCATCAAATGCTGCTCAAATTCTTTACGTCTACAAAACTGCTATTTCAGGTTTTGCTGCCAAGCTCTCCACCAAAAAGCTTCATTCTTTGAGCAAAACTCCTGGCTTTCTGGCAGCCACTCCTAATGAACTACTACAGCTTCACACTACCCACTCCCCTCATGTCAAAATCAAGAATCCAAAGGGAATAGGGATTAGTGTGAAGCCTGAGAAGTTGAGTTTTAGGAGATATGGACAGAAGCTGAGTTACCAAGTGAGCTTCGTTGCATTGGGTAAAAGAGAAGGCGTGAGTGGATTTTCTTTTGGATCTCTTGTTTGGGTGTCGGGAACATATGCTGTGAGAAGTCCTATAGCCGTAACTTGGAACTGCTGCTGCTGCGGATCAACAATCCTACATAATTCACATGGACGCCACAAAGATGGCCACAACCAACCCTCAACAATGGTACACATCCATCATTGA 2481 49.46 MSLKESHVEAKEAMVYSYTKSFNAFAAKLTEQEANALSKRGDVTHVIPNRRREIQTTRSWDFIGFSSNAKRRPNRESNIIVGLFDTGISPTADSFKDDGFGPPPKKWKGTCQKSANFSGCNNKLIGARYFMLEGSAGPQDIMAPVDVTGHGTHTSSTAAGNVIAGASLSGLAEGTARGGVPSARVAMYKVCWVGVGCSDMDILAAFDAAIHDGVDVISISIAGTGFSNYSEDVMAIGAFQAMQKGIITVAAAGNTGPAAGSVVNTAPWIVTVAASTIDREFVTKLVLGNGWNISGVGINLFNEQPKMYPLVDGGDVAKNPGDKTSANFCMEGSLDPTKANGKLVFCQLMIWGADSAVKTAGAHGAVIQSDQYYLDHTDLFMVPATLVNSTIGQTIEAYIKSTKTPTAMIYRTVQRQAAAPFVASFSARGPNQRSRLILKSPDGEFGYGAGLLNPDRAREPGLIYEADKMSYIQHLCNQGYNASSISILTGAGPVDCSTLIPAQGYDSLNYPTFQLSLNNTRHPTTAVFWRQVTNVGRPTSVYKATITAPPGVEITVEPTSLSFSSLQQTQSFKVVVKANPLPPQNMVSGSLTWAYANYVVRSPIVIYTHEDFGDNEVCLFLSIFLATSTAAVDQQSYIIHMDTTKMAAPTPEQWYTALIDSINEISSLEDQEEASNAAQILYVYKTAISGFAAKLSTKKLHSLSKTPGFLAATPNELLQLHTTHSPHVKIKNPKGIGISVKPEKLSFRRYGQKLSYQVSFVALGKREGVSGFSFGSLVWVSGTYAVRSPIAVTWNCCCCGSTILHNSHGRHKDGHNQPSTMVHIHH 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 256959 266735 + Carg21997-RA Car04g00049 145474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00049 826 Pfam Subtilase family 77 433 IPR000209 GO:0006508|GO:0008236
Car04g00049 826 Pfam Peptidase inhibitor I9 5 54 IPR010259 -
Car04g00049 826 Pfam Peptidase inhibitor I9 636 721 IPR010259 -
Car04g00049 826 Pfam Fibronectin type-III domain 508 606 IPR041469 -
Car04g00049 826 Pfam Fibronectin type-III domain 727 792 IPR041469 -
Car04g00049 826 ProSiteProfiles Serine proteases, subtilase domain profile. 59 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00049 Car-Chr4:256959 Car04g01067 Car-Chr4:6121382 1.59E-37 dispersed
Car04g00049 Car-Chr4:256959 Car04g00050 Car-Chr4:266774 3.62E-15 tandem
Car04g00049 Car-Chr4:256959 Car04g00933 Car-Chr4:5351069 1.16E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00049 - - zju:107432652 671.774