Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00053 ATGGCCGGATTTGTGGCCAGCGACAGCGACAGTCCACCAGATGTGGCTCTACTGGACTTTGTTCGAGATGTTGTTCGAATGTCGGCGGGGACGAACAGTCTAAAGGTTTTCAAAAAGGATTGCACCGATCTCGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTCAGGAAATCAGAGACTTTAATGGCGTCCAATTTCGACCTGTTCATACATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGAGTGATTCATCTCCGAGTCCGTGGCTGTGTGATTTGGTGGCGGCATTGAAGGATACTAAACGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTACCAGGAAGATACTCTTCCAATTCCAATGTGTGACGCTGAAGTTAGAGAATGCTTTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGATGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACCGCAATTCCTCCTTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGAATTTCCAAATTGCAGAGGCTTCATGAATAATGGTGTGGATCAGCTGATTTTCGAAGGACTTGAGAAGAAACTTCCATCCTCCTCAGAGGCTTGTTCTGATGGACAGGATGCTTCTACCAAAAAGAGTGGAGATCAGGTGAAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACCTATGAGAGATCTTATGTGCAAAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAACTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTACTCAGTGGTGTGTTGATCACAATATTGAGCAACCGACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTGCGCAAGCTAACTAGCCATTCGATTGCGGAGCAGAGAGCTTCTGTGACTGAAATTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATTCTGATAGCTGAAGCAGGAGCAATACCAAATTTGGTCAATTTGTTAACTGCTGCTGATGTTTTAATACAAGAGAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAATAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGGAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCACTCCGGCTCTTGTGGATTTACTTGAAACTGGAAGCCCAAGAGGGAAAAAGGATGCTGCAACCGCACTATTTAATTTGTGTATCTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATCCCAGCTCTATTAAGGATGCTCAACGTCTCAGGTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTGCTGAGGACCGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTATGTAAACGAGATACCGACAACCTTTCTTGCATAAGTAGGCTTGGGGCTAAGATTCCGCTGACTGAGCTCTCCAAGAGCGGCACAGAGAGAGCAAAAAGGAAGGCTACCTCACTGTTGGAACATCTTGGAAAACTACAGCAGCTATAG 1992 43.98 MAGFVASDSDSPPDVALLDFVRDVVRMSAGTNSLKVFKKDCTDLVRRIVLLTHLFQEIRDFNGVQFRPVHTSCSSSSSSSSSSSSSSSSGSDSSPSPWLCDLVAALKDTKRLVFIASTFRSCSSSSEEVTRKILFQFQCVTLKLENALGNLPYDRFDISEEVQEQVELVRAQMRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWADNFDVEENGVVDHEITVKFDEFPNCRGFMNNGVDQLIFEGLEKKLPSSSEACSDGQDASTKKSGDQVKNSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCVDHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIAEQRASVTEIRSLSKRSTDNRILIAEAGAIPNLVNLLTAADVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGATPALVDLLETGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLRMLNVSGNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLARNKENAAAILLALCKRDTDNLSCISRLGAKIPLTELSKSGTERAKRKATSLLEHLGKLQQL 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 283576 286558 + Carg22001-RA Car04g00053 145478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00053 663 Pfam U-box domain 284 355 IPR003613 GO:0004842|GO:0016567
Car04g00053 663 MobiDBLite consensus disorder prediction 73 96 - -
Car04g00053 663 Pfam Armadillo/beta-catenin-like repeat 414 452 IPR000225 GO:0005515
Car04g00053 663 Pfam Armadillo/beta-catenin-like repeat 496 534 IPR000225 GO:0005515
Car04g00053 663 MobiDBLite consensus disorder prediction 257 279 - -
Car04g00053 663 MobiDBLite consensus disorder prediction 258 279 - -
Car04g00053 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Car04g00053 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Car04g00053 663 Coils Coil 159 179 - -
Car04g00053 663 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00936 Car04g00053 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00053 Car-Chr4:283576 Car15g00890 Car-Chr15:5383216 0 dispersed
Car04g00053 Car-Chr4:283576 Car04g00936 Car-Chr4:5378929 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00053 - - cmax:111484365 1201.81