Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00058 ATGGCTGGAGATATCGAACACCCGTTTACCTTCGATTTTCAGGTAGAATCTGCAATCTCAGACTCCATATCATTTGGAAGGTTCGAAAATGAATCATTATCTTGGGAAAGGAGGTCATCGTTCTCCCATAATCGTTACCTAGAAGAGGTAGAAAAATTCTCCAAACCGGGTTCAGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAGAAGGGAGGCTTGCTTGGTCAGAATTCAGCAGAGTCCCATACTTTTGACAAGGATGTATTAGAGCTAGTGAATCAAGGAGAGGATAATGAGATTATAAACAAGGAAAATCATGATGACCCTTTCGACGATAGATCTGTCAGTTCACAAAACCATGGGTACCATGTCACAGAAATTGAAGAAATGCCAAAACCTGGAATTTCATCTCCTAATCCTAAATTTCAAAATTCTTTCAGCAGTGTTGGTGGTTCAGTGTCTGGTGATCTTAATGGTGCCAATGCTGAAATAAATGAACAAGATGACAGTGAGGGGAACAAATTCTCAACTTTTGTAGGTGATGATCCAGAGGTTGAAATAAAGCAAGATGTCAACAATATTGGAATGAGTGAGAATACACCATCTGAAGCCATGGAGTCAGTCCCCAAACTAGTGAAGAAAACTGGCAAATGCAGCTCAGGAAGTCGGCAAACTCTCACTCAGAAGATGACATCTCAAAGGGAAGCAAAAGCTTCCAAATCTCTGGCCAACATTCGTCAGAGTCGGAGAAATATTTCTGGTGGTGCAATCAATACTCCTGAAAAAGTGTCCAATAAAAGCAAAGGAGAGACATCACATACAACTTGCACAAATGCGCATTCATCAAAAACTACCACTCTACGTACACATGCTGTCCGTAGATCCCCCAAAGTTGAGGATTCTAATGTTCCCAAGGGAAAACTCGTTCTCGAGAGTAGAAGTGGTGAGAAGATACAAACTTCTGGAGTATCATATTCTTCTCCATCAAAGCTTGAATCTAGATCATACCTAAAGACAACCGCCAGGCAAAATCGGACTGTCAACTCAGCCATGCAAGTTACAGGGAAAAGGGGTTCAGCTTCCAATTTTAGAAGCACTGACAAGGCGCTGTTGTCTCGGGGCAAGGCAAATTCTGAAATTAATAAATTACAGAAGAACCTTGACATCAGATCAAAACCAGTGCCCTCTTCTTATGGTGCAGTTCGACCAGAGTCAGATGGGAAGAAG 1236 41.59 MAGDIEHPFTFDFQVESAISDSISFGRFENESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTFDKDVLELVNQGEDNEIINKENHDDPFDDRSVSSQNHGYHVTEIEEMPKPGISSPNPKFQNSFSSVGGSVSGDLNGANAEINEQDDSEGNKFSTFVGDDPEVEIKQDVNNIGMSENTPSEAMESVPKLVKKTGKCSSGSRQTLTQKMTSQREAKASKSLANIRQSRRNISGGAINTPEKVSNKSKGETSHTTCTNAHSSKTTTLRTHAVRRSPKVEDSNVPKGKLVLESRSGEKIQTSGVSYSSPSKLESRSYLKTTARQNRTVNSAMQVTGKRGSASNFRSTDKALLSRGKANSEINKLQKNLDIRSKPVPSSYGAVRPESDGKK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 310477 313130 - Carg22006-RA Car04g00058 145483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00058 412 MobiDBLite consensus disorder prediction 220 294 - -
Car04g00058 412 MobiDBLite consensus disorder prediction 132 370 - -
Car04g00058 412 MobiDBLite consensus disorder prediction 295 315 - -
Car04g00058 412 MobiDBLite consensus disorder prediction 140 177 - -
Car04g00058 412 MobiDBLite consensus disorder prediction 385 412 - -
Car04g00058 412 MobiDBLite consensus disorder prediction 317 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00058 - - - cmos:111447605 783.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00941 Car04g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00058 Car-Chr4:310477 Car15g00359 Car-Chr15:1885876 3.12E-22 dispersed
Car04g00058 Car-Chr4:310477 Car04g00941 Car-Chr4:5418123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00058 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 2.40619 2.301628 2.771334 6.257288 6.638949 6.40501