Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00059 ATGAGTAATCGGACAGGACTTCTTCGAATTCGCCTCTTGCGAGGCATCAATCTCGCCATTCGTGATGCTCCCACCCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAACCAGAAATTCAAATCTCGAGTGGTGAAAAAAAACTGCAATCCACAATGGAACGAGGAATTCACACTCTCAATTACGGACATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATCGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAAACCATACATAGAGTGTTTGAATATGGGATTAGAGAGTCTGCCGAAGGGTTGTGTGGTGAAAAGGGTCCAACCAAGCAGATCAAACAACCTTGCAGATGAGAGCCCTTGCGTTTGGAACGATGGTAAGATCATTCAAGACATGACTCTCAGATTACAGAATGTTGAATGTGGTGAAATCGCGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTAAAGGCATGAGAACCTACTCTTTATCCTGA 522 45.21 MSNRTGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKNCNPQWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLESLPKGCVVKRVQPSRSNNLADESPCVWNDGKIIQDMTLRLQNVECGEIAIQIQLFNASGIKGMRTYSLS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 314989 316803 + Carg22007-RA Car04g00059 145484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00059 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 165 IPR044562 -
Car04g00059 173 PRINTS C2 domain signature 24 36 IPR000008 -
Car04g00059 173 PRINTS C2 domain signature 48 61 IPR000008 -
Car04g00059 173 PRINTS C2 domain signature 69 77 IPR000008 -
Car04g00059 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 102 IPR035892 -
Car04g00059 173 Pfam C2 domain 7 94 IPR000008 -
Car04g00059 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Car04g00059 173 Gene3D C2 domain 1 166 IPR035892 -
Car04g00059 173 SMART C2_3c 7 104 IPR000008 -
Car04g00059 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 165 - -
Car04g00059 173 CDD C2_ArfGAP 6 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00059 Car-Chr4:314989 Car10g00310 Car-Chr10:1521794 1.28E-65 dispersed
Car18g00587 Car-Chr18:6933034 Car04g00059 Car-Chr4:314989 1.58E-13 dispersed
Car04g00059 Car-Chr4:314989 Car04g02064 Car-Chr4:16803954 4.07E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00059 - - csv:101205028 313.153