Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00066 ATGGCATTGGAATGGGTCGTTCTTGGCTACGCCGCTGCGGCTGAGGCAATCATGCTCCTCCTCCTCACCATCCCAGGCCTCGATGGACTCCGGAAGGGCCTAATTGCTGTTACTCGCAATCTTCTCAAGCCATTTCTCTCCGTCGTTCCCTTTTGCCTCTTCTTGCTCATGGATATCTACTGGAAATACGAAACTCTCCCCAGTTGTGAATCCGACTCATGCACCCCTTCTGAGTTCCTTCGTCACCAGAAATCGATCATGAAGAGCCAACGCAATGCGCTCTTGATCGCTTCGGCGCTTGTGTTCTACTGGCTGTTGTACTCTGTCACCCATTTGCTTGTCAAGGTTGAGCAATTGAACCAGCGTATTGAGAGGTTGAAGAATCGGGATTGA 393 50.89 MALEWVVLGYAAAAEAIMLLLLTIPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIYWKYETLPSCESDSCTPSEFLRHQKSIMKSQRNALLIASALVFYWLLYSVTHLLVKVEQLNQRIERLKNRD 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 355734 356126 - Carg22014-RA Car04g00066 145491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00066 130 Coils Coil 109 129 - -
Car04g00066 130 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 130 IPR008417 GO:0005783|GO:0006886|GO:0016021
Car04g00066 130 PANTHER B-CELL RECEPTOR-ASSOCIATED-LIKE PROTEIN 1 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00066 - - - csv:101213354 241.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00952 Car04g00066 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00066 Car-Chr4:355734 Car13g00811 Car-Chr13:8889467 4.49E-29 dispersed
Car04g00066 Car-Chr4:355734 Car04g00952 Car-Chr4:5493279 5.69E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g483 . . . . . . Bma14g01900 . Cmo04g01094 . Cma04g01017 Cma04g00071 Car04g00952 Car04g00066 Sed06g0167 . . Bhi07g00377 Tan04g1528 Cmetu10g0671 Lac13g1370 Hepe01g0567 . . Cla07g00564 Cam07g0590 Cec07g0657 Cco07g0626 Clacu07g0593 Cmu07g0627 Cre07g0967 Cone13ag0737 . . . Lsi04g01111 . . Cme10g01601 . Blo11g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g530 . . . . . . Bma14g01900 . . . . Cma04g00071 . Car04g00066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006447 2 1 2 2 1 1 2 1 1 0 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00066 Car_Chr04 FPKM 1.087761 0.945957 2.350854 1.924675 4.132242 2.95991 3.163815 3.461601 3.531002 3.980453