Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00067 ATGCCTTCATTTCTCCTCCTCTTTCTCTTCACTTCCGCCCTATCGCCGCCGTCCTCGGCGACAACCACCGCCGAGTCCTTCGTCTACGGCGGCTGTTCCCAAACCAAATACACTTCCGGTTCAACCTATGAGTCAAATCTCAATTCCATCCTCACCTCTCTTATAAATTCTGCCTCCTTCACATTATACACTAACTCCACCGTCGCCGGCGCCGGCGACGGCGACACTGTGTACGGACTGTTCCAGTGCCGGGGGGACCTCCAAAACGCGGCCTGTGCCAACTGCGTGGCCCACGCTGTCGCCCAGTTGGGGTCGATATGTCTAGACGCGTGTGGTGGCGCGTTGCAGTTGGAGGGGTGTTTTGTGAAGTACGACAATGTTAGCTTTTTGGGAGTGGAGGACAAGACGGTCGTGGTGAAGAAGTGTGGGGCGGTGATGGGGTATGATTCTGGTGGGTGGGCTAGAAGGGATGCTGTGTTAGCGTATTTAGCGGCGGCGGATGGCAGCGGTGGTGGATATCAGCCGTTTAGAGTGGGTGGGTCCGGGGATGTACAAGGGGTGGCGCAATGCGTTGGGGATTTGGATGCTGGAGAGTGCCAGGACTGTGTGGTGACGGCCGTGGGACGGCTGAAGGCGGAGTGTGCGGCGGCGGGGTGGGGGGATGTGTTCTTGGGTAAGTGTTATGCGAGGTTTTCTCATGGCGGTATCCGCCCCCACGGCGGCGGCGGAAATGACGGTAGAAATACGGACGTGGAGATAGAAAAGACTCTAGCGGTAATAATAGGACTCATTGCTGGGATTGCCTTCATCGTTGTGTTCCTCGCTTTCCTAAGCCATTACTGTGAGAAACGTAAAGGTGGCAAATGA 867 56.29 MPSFLLLFLFTSALSPPSSATTTAESFVYGGCSQTKYTSGSTYESNLNSILTSLINSASFTLYTNSTVAGAGDGDTVYGLFQCRGDLQNAACANCVAHAVAQLGSICLDACGGALQLEGCFVKYDNVSFLGVEDKTVVVKKCGAVMGYDSGGWARRDAVLAYLAAADGSGGGYQPFRVGGSGDVQGVAQCVGDLDAGECQDCVVTAVGRLKAECAAAGWGDVFLGKCYARFSHGGIRPHGGGGNDGRNTDVEIEKTLAVIIGLIAGIAFIVVFLAFLSHYCEKRKGGK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 357025 358355 - Carg22015-RA Car04g00067 145492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00067 288 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
Car04g00067 288 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Car04g00067 288 Pfam Salt stress response/antifungal 176 232 IPR002902 -
Car04g00067 288 ProSiteProfiles Gnk2-homologous domain profile. 134 236 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00067 - - - csv:101213591 456.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00067 Car15g00921 CCT
Car04g00953 Car04g00067 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01472 Car-Chr2:9598205 Car04g00067 Car-Chr4:357025 2.59E-42 dispersed
Car04g00067 Car-Chr4:357025 Car15g00684 Car-Chr15:3812010 2.03E-90 dispersed
Car14g01651 Car-Chr14:13201745 Car04g00067 Car-Chr4:357025 6.34E-35 dispersed
Car17g00121 Car-Chr17:754250 Car04g00067 Car-Chr4:357025 1.68E-31 dispersed
Car04g00067 Car-Chr4:357025 Car04g00953 Car-Chr4:5496182 3.33E-158 wgd
Car04g00067 Car-Chr4:357025 Car04g02054 Car-Chr4:16697132 1.17E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g484 . . Bda01g01801 . Bpe13g01013 . . . Cmo04g01095 . Cma04g01018 . Car04g00953 Car04g00067 Sed06g0165 . Cpe01g01834 Bhi07g00378 Tan04g1527 Cmetu10g0773 Lac13g1367 Hepe01g0572 . . Cla07g00560 Cam07g0588 Cec07g0655 Cco07g0624 Clacu07g0591 Cmu07g0626 Cre07g0966 . . Cone6ag0373 Cone9ag0402 Lsi04g01110 . . Cme10g01607 . Blo11g00970 Bda07g01755 . . . Bma01g00483 . . . Cmo15g01022 . Cma15g00975 . Car15g00921 Cpe13g00352 . Bhi12g00934 . . . . . . Cla01g00633 Cam01g0661 Cec01g0653 Cco01g0679 Clacu01g0649 Cmu01g0623 Cre09g1881 Lsi09g00682 Csa05g01000 Chy09g00509 Cme09g01349
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010363 1 1 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00067 Car_Chr04 FPKM 0.0 0.0 31.147446 26.108139 61.68594 72.997856 62.63689 1.396171 1.963213 1.662573