Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00068 ATGGCTGAACTCTCGAATCTCTCCTCGAGCCCCAGTGAAGAAAGCGAGAAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGATAGGAACCATGACGGCGTCGTTTATCCATGGGAAACCTTCAAAGGCTTCCGAGCGATCGGGGCGGGTTTGTTTCTGTCCTCCGTCAGTGCTTTTTTTATTAACATCGGACTCAGCTCCAAAACCCGACCCGGAAAATGTCCCAACTTTTTATTCCCAATTGTGATAAAGAACATTCACCTTGCCAAACATGGAAGTGATTCTGGTGTATATGATTCCGAAGGAAGGTTTGTTGCATTAAAATTTGAAGAAATTTTCAAAAAGCATGCGCTAACGTATCCGGATGCCTTAACCGAAAAAGAGCTTAAAGCGATGCTGAAAGCAAATAGAGAGCCGAAGGACTATAAGGGATGGATTGGTGCATGGGCAGAGTGGACAGCTCTATACATCCTTTGCAAAGATGAGAATGGATTGCTTACAAAGCAAACGGTGAAGGGTGTTTACGATGGAAGCTTATTCGAACATATGGAGAAACACAGAGTATCAAAGAAGAAGAAATGA 582 44.16 MAELSNLSSSPSEESEKNVLQKHVAFFDRNHDGVVYPWETFKGFRAIGAGLFLSSVSAFFINIGLSSKTRPGKCPNFLFPIVIKNIHLAKHGSDSGVYDSEGRFVALKFEEIFKKHALTYPDALTEKELKAMLKANREPKDYKGWIGAWAEWTALYILCKDENGLLTKQTVKGVYDGSLFEHMEKHRVSKKKK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 360528 362116 - Carg22016-RA Car04g00068 145493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00068 193 Pfam Caleosin related protein 16 183 IPR007736 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00068 K17991 PXG; peroxygenase [EC:1.11.2.3] - csv:101213829 321.242
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00954 Car04g00068 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00726 Car-Chr5:5059573 Car04g00068 Car-Chr4:360528 6.94E-55 transposed
Car17g00126 Car-Chr17:772639 Car04g00068 Car-Chr4:360528 3.10E-60 transposed
Car04g00068 Car-Chr4:360528 Car04g00954 Car-Chr4:5497936 4.34E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g486 . . Bda01g01800 . Bpe13g01012 Bpe10g00979 . . . . Cma04g01019 Cma04g00072 Car04g00954 Car04g00068 Sed06g0164 . . Bhi07g00379 Tan04g1526 Cmetu10g1601 Lac13g1359 Hepe01g0573 . . Cla07g00554 Cam07g0587 Cec07g0650 Cco07g0621 Clacu07g0590 Cmu07g0625 Cre07g0964 . . . . Lsi04g01109 . . Cme10g01608 . . . . . Bpe02g01974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00954 CST 7 192 Pollen Coat Proteome AT1G23240 55.9 2.2e-59 226.1
Car04g00068 CST 13 193 Pollen Coat Proteome AT1G23240 55.2 7.7e-57 217.6
Car04g00954 CST 7 192 Pollen Coat Proteome AT1G23240 55.9 2.2e-59 226.1
Car04g00068 CST 13 193 Pollen Coat Proteome AT1G23240 55.2 7.7e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00068 Car_Chr04 FPKM 4.182927 2.07639 422.250092 407.901642 31.218494 39.568272 33.60638 1.155805 0.541858 0.605764