Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00085 ATGTCGATGAGAACTGTGAAGGTCAGCAATATCTCGAAGGCTACTTCGGAGAGAGATATCGAAGAATTCTTTTCATTCTCTGGTGAAATCCTTTATGTTGAAATGCAAAGAGAAACTGAAAATACTCAGGTTGCTTATGTTACATACAAGGATTCTCAAGGAGCAGATACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTGCTCTGGTTGAGAATTATCATCTTCCACCAGAAGCAATGTCATCAATCCTGGATAAAAGGCAAACTGTTACTGGGAATGCTCCGAATCAGGCAGAAGACGTCGTAAGTACAATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTGTCAACAAGGCAAAAGCGTTCGATGAACGGCACCAATTGACATCGAATGCTTCTGCGACTGTCACGTCCATAGATCGCAAGATGGGCATAACAGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAAAGTTCCAGGTTTCTGAAAAGACGAAATCCGCTCTCGCAGTGGCCGAGCAGAAGGCAAGCAGTGCAGGAACTGCGCTCATGAGTAACTATTATGTGTTTACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCTGTTACAAAGGCTGCTGAGGAAGTGACTCAGATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATACCGCGAAAGAACTGGGATCATCAACAACTTCGCCGAGCTCCATCTCGACGAGCCATTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCTGATAGATAA 837 44.32 MSMRTVKVSNISKATSERDIEEFFSFSGEILYVEMQRETENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTIALVENYHLPPEAMSSILDKRQTVTGNAPNQAEDVVSTMLAKGFILGKDAVNKAKAFDERHQLTSNASATVTSIDRKMGITEKITAGTAVVNEKVREMDEKFQVSEKTKSALAVAEQKASSAGTALMSNYYVFTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 450969 453691 + Carg27433-RA Car04g00085 145510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00085 278 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 277 - -
Car04g00085 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 277 - -
Car04g00085 278 SMART rrm1_1 5 74 IPR000504 GO:0003723
Car04g00085 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Car04g00085 278 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Car04g00085 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 68 IPR000504 GO:0003723
Car04g00085 278 Coils Coil 219 239 - -
Car04g00085 278 Gene3D - 2 74 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00085 - - - cpep:111783289 510.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00085 Car-Chr4:450969 Car16g01110 Car-Chr16:9564824 1.71E-96 dispersed
Car04g00085 Car-Chr4:450969 Car04g00971 Car-Chr4:5598676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g525 . . . . . . Bma14g01921 . . . . Cma04g00084 . Car04g00085 . . . . . . . . . . . . . . . . . . . Cone6ag0347 . . . Chy10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01126 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010782 0 1 0 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00085 Car_Chr04 FPKM 0.0 0.0 0.0 0.202875 0.770989 0.992675 0.417717 0.290991 0.196017 0.126467