Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00086 ATGAAATCCAAGAAGCGAAGGTCGAAGCCGAAACCGCAATCGGAGTGTCCTCCCAAGAAGAAGCTTCGTTCTCAGCTTCCTCGCCGGAGACGCGCTCGGATTTCTCCTGTTTTCTGCTTGCCGGAGTCGGATTCGGCTGCTCCGTGTACGAGTGTTGGTCTTGTTTCTTCTTCCGTTGCTGCGGCTGAGTCCAGCTGCGGTTCCTTCCAGGGAGGAGGAGGAGGTGAGGTTTCTAGTCAACTCAATGCGGTTTTTGAATTGGAGAGTGGTGCTGTGAATGCGAGGACGAATTTGCGGAAGACGCGATTTGGTTCGAGTGCCGAGTTTATTGAAGTGAATTTGGATTCTGCTTCCAATGGAGTAGCGAGAGATTGCTTTAACGAGGATTGTGAGGTTAAGAAGGGAAGGAATGAGGCTAACGTCGAAGTTTCTGAATCGTCTTGCGTGGAGTCGAATTCTGGAGTTGATTTTGTTGTTCTCGGAAGGAGTAGCTCGAAGTTGAAGATTAGGAGTGGTTTTAGGAGAACCGTAGAGGAAAATGAAGATCAAGCCGATCAAGCGGAAAATGGAGCTCTGAAGTTCGAACTGACTGATGCTGATGTCTCGTCGAAGCTTTGTGGAAAGGGAGCTGTGCCACTCTCTCCTTGTGTAGAGTCTTGGGCTGAATCTATCTTCGAGAGCGTCTGTTCGTTCGAAGAGAAAGGATTAGAGGTTGAGGAGAACAGAGTGTGGGAATTTCAGGTACCGGAGATACCGAGGAATGAGGTCAATGAAACTTTCACTATTTCGAAGTCGGATTCGACAATAGAACAGTGGCCTAACAACTTGAAGTTTGAATCGGATCTTGCTTGCACGGAGCAATTATCTTACGAGGACGTTTCGGAATACTCTAGCCAGGACTTGCGCGAGCTTCAGTCAACTATTCTAATGGGGATTTCTGATACGGACTGCTCAGATTACACTCCTTCAAATTTCTTGGAATCCGGAAGCGAGTTTTCAGAGAAATCAAACGATGATGCAGCTCCTTCATCAGCATTTAGCATGTTACTGCAGTTCAGAAGCGATTTTTTAAGATCGTGTGCCTCTGAAGACATCAGAACTAGCTCGTCAATTGAAGAAGAGAACGCAGATCAATCTTTGTTTTTGAGATTGGAAGGATTGGACGATGAAGAAACCTATCGAATATTCAGAAACAGAGAAAGACGCCAATTGATTATTCGCGACTACGTTGATGAGTACCGGTCCACGACGGATTATGGCGATCTCATCCTCCAGCAACGATCAAATATGGTTCAATGGATAGTTGAACGATCGAGAGATACCAAACTTCATCAGGAGACGACATTTTTAGGAGTAACCCTTCTCGACCAGATTCTGAGCAAAGGATTCTTCAAAGCTGGAAGACACCTTCAAATTCTGGGCGTAGCATGTCTAACTTTGGCCACTAGAATTGAAGAAAATCAATCATACAGCTGGATGCAGCAAAGGAGCATCCGTGTAGGGGACAACACCTATAGAAGATCTGAAGTTGTTGGCATGGAATGGCTTGTTCAAGAAGTCCTGAAGTTCCAGTGTTTCCTGCCAACTGTTTACAACTTCTTGGGGTTCTACCTGAAAGCTGCTGGAGCGGACTCAGATTTGGAGAATCGAGCTAAGAACTTCGCAGTGCTCGTTCTTTCAGATCAAGTCCAATTTTGTTATTTCCCTTCAACTATTGCAGCTGCGGTTGTCCTCCTGGCTTCCTTCGGAGAAACACAAGATTTACCAAATCAACGAGTCATCGAGGTTAAAATTCAAATATCTGCTAGAGAAATTCACTTTATCTATTTATATACCTAA 1839 45.24 MKSKKRRSKPKPQSECPPKKKLRSQLPRRRRARISPVFCLPESDSAAPCTSVGLVSSSVAAAESSCGSFQGGGGGEVSSQLNAVFELESGAVNARTNLRKTRFGSSAEFIEVNLDSASNGVARDCFNEDCEVKKGRNEANVEVSESSCVESNSGVDFVVLGRSSSKLKIRSGFRRTVEENEDQADQAENGALKFELTDADVSSKLCGKGAVPLSPCVESWAESIFESVCSFEEKGLEVEENRVWEFQVPEIPRNEVNETFTISKSDSTIEQWPNNLKFESDLACTEQLSYEDVSEYSSQDLRELQSTILMGISDTDCSDYTPSNFLESGSEFSEKSNDDAAPSSAFSMLLQFRSDFLRSCASEDIRTSSSIEEENADQSLFLRLEGLDDEETYRIFRNRERRQLIIRDYVDEYRSTTDYGDLILQQRSNMVQWIVERSRDTKLHQETTFLGVTLLDQILSKGFFKAGRHLQILGVACLTLATRIEENQSYSWMQQRSIRVGDNTYRRSEVVGMEWLVQEVLKFQCFLPTVYNFLGFYLKAAGADSDLENRAKNFAVLVLSDQVQFCYFPSTIAAAVVLLASFGETQDLPNQRVIEVKIQISAREIHFIYLYT 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 455024 458689 - Carg27432-RA Car04g00086 145511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00086 612 Pfam Cyclin, C-terminal domain 528 583 IPR004367 -
Car04g00086 612 MobiDBLite consensus disorder prediction 1 30 - -
Car04g00086 612 Pfam Cyclin, N-terminal domain 393 524 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00086 K21777 CCNB; G2/mitotic-specific cyclin-B, other - csv:101214640 697.967
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00086 Car-Chr4:455024 Car04g01296 Car-Chr4:7500349 3.86E-19 dispersed
Car04g00086 Car-Chr4:455024 Car04g00972 Car-Chr4:5602025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00086 Car_Chr04 FPKM 22.695221 25.427841 11.584632 11.684763 10.166476 9.922056 9.538427 10.482893 11.277947 11.672033