Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00089 ATGGAGACCTCGGCTTCCAATTCTGATCCTTATCCCAATTCTTCTTCACCCACAACTTCTCCTACCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTCAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCCTCATGAATCGGAACCTATAATCAACGGCTCTGCCACCCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGACCACCACTTCTCCTTCTTCTTCTTCTTCTTCTAGTACTAGTCCCACCTCCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCGGCTCTGGTTGGACAAGCTGGCTATGAGCAAAATGGTGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACTGCTTCTTCGTCTATTCAATCTGGAAGCAGTCGTGTTTCAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATCCAGCAGGTTGCCAGGTGGATTGAACAGATTCTTCCTTTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGTATATCAGCTGTTATGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGGACATCTATTGCATTTTTGGTTCATGTTATTGGAATTTACTGGTGGTGCCATAGTGATGATCTTCTATACCCGTTAGTCATGCTTCCACCAAAGACAGTACCACCATTTTGGCATGCCTTGTTCATAATCTTGGTTAACGATACGATGGCGAGGCAGGTTGCAATGGCTCTCAAATGTCTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTCATGGAGTACACTCTTCTGTTGTATCGTGCATTATTACCGACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGGTAAGTGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTCTGCCGGGCGCTGGTAAAGCCAGCAGAACTCCGAACATTTGGCGACGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1371 45.15 METSASNSDPYPNSSSPTTSPTSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVPHESEPIINGSATPDLRVYSQNQNHLMTTTSPSSSSSSSTSPTSSSSGNTSPSGEVSIRIIGSGEQDPSPALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVSESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITICISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCLLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKVSAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 508737 513300 - Carg24464-RA Car04g00089 145514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00089 456 MobiDBLite consensus disorder prediction 81 184 - -
Car04g00089 456 MobiDBLite consensus disorder prediction 155 184 - -
Car04g00089 456 Pfam Zinc finger, C3HC4 type (RING finger) 393 436 - -
Car04g00089 456 ProSiteProfiles Zinc finger RING-type profile. 395 433 IPR001841 -
Car04g00089 456 MobiDBLite consensus disorder prediction 81 112 - -
Car04g00089 456 ProSitePatterns Zinc finger RING-type signature. 410 419 IPR017907 -
Car04g00089 456 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00089 Car-Chr4:508737 Car07g01160 Car-Chr7:7000942 1.15E-175 dispersed
Car04g00089 Car-Chr4:508737 Car04g00979 Car-Chr4:5653397 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00089 - K22379 csv:101207430 734.176