Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00097 ATGCGAGCATTGTTGAAGATGAAACGGCTGCTTGAGCTCTTTGTGTTGTTCGTTTTGGCTCCACTCTGTGCGAGATGTCTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTGAAGATCCAAAGCAGAACCTCGCGACCTGGGACGAAGATGACGATAGTCCCTGCAACTGGACTGGTGTTCAATGCAGTCCCAGATCCAAACGGGTTGTCGAGCTCAACCTCGACGGATTCTCTCTCTCGGGTCGGCTCGGTCGAGGGCTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGTTATCGAAGAACAATCTCAGTGGAAATTTAAGCCCCAATTTTGCTCGAGTGGATAATCTTCAGGTGATTGATTTGAGCGGGAATAATTTGTCTGGAACTGTTCCAGATGATTTTTTCCGTCAATGTGGGTCTTTGAGAGTTGTTTCTTTGGCCAACAACAAATTTGATGGGAAAATTCCTGATAGTTTGAGCTCGTGTGGGAGTCTTATTGCTGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCCTCTGGGGTTTTGTCTCTCAGTGGGCTTCGATCATTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCGAAGGTAATTGAGAATTTATATAACCTGCGGACTCTTAACTTGAGGAAGAATCGATTTTCTGCACAGATTCCTGATGGTATTGGCAGCTGCTTGCTTCTGAGGTCCATTGATCTTAGCGAGAATTCATTCTCTGGGAACCTTCCTCAGACTATGCAGAAACTTGTTTTTTGCACTGATCTGATTTTGAGCAGGAATTTGTTACAAGGAAATGTTCCCGAGTGGATAGGAGAAATGAAAAGCCTTGAAACTCTGGACTTTTCCGGGAACAATTTCACAGGCCATATTCCAACTACAATGGGGAATCTTCAATATCTAAAAGTATTAAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAGTCTGTGATGAAATGCCAAAACCTTCTGTCAGTAGATATCAGTCATAATTTCATCATGGGTAATCTTCCAGCGATTGGAAGTTTAGCCAAGCTACAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGACCTATTCCAGAAACTATTGGAGATCTGAAAGCTTTAAGAGTTCTTGATTTGAGCAGAAATCGTCTGAATGAAAGCATTCCCGAAGTGATTGGAGGAGCTGTGTCCCTAATGGAACTGAAGCTGGATGAAAATTTTCTAGGGGGTGAACTTCCCTCTTCAATTGGTCACTGTTCTTCCCTTACAACTTTGTTCACATCGCACAATAACTTAACTGGCCCGATACCTGCGGAGTTAGCTAAACTCACTTATCTCCGAAATGTCGACTTATCCTTTAACAACCTCAATGGAACTCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTTTGTTCAATATTTCTCATAACGACCTCAAGGGTGAGCTGCCTGGTGGTGTATTCTTTAACACCATCTCCCCTTCATCCGTAGCTGGAAATCCATCCCTTTGTGGCTCTGTCGTTAATAAGTCTTGCCCTTCTGTTCTTCCAAAACCTATTGTGCTCGATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTACTAATCTCAGAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGCGCCGCTGCTTTCATCATCATAGGCATCATATTGATCACCATCCTCAACAGTCGTGTTCAACCGCCCACGTCTTCTTTGTCTGCAGCTGCACTTGCATTATCCATAGGGGATGATTTCAGTCATTCCTCCAGCCCTGATGCGAATTCGGGAAAGCTTGTGGTGTTGTCAGGAGAGCTTGACTTTAGCGCAGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTCGGGTGCGGTGGGTTTGGAGCAGTTTACCATACCGTTCTGCGGGATGGACACTCTGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTCGTCAAGTCCCAAGAAGATTTCGAGAGGGAAGTTAGGAAGTTTGGGAATGTCAGGCACCAAAATCTGGTGACACTCGAAGGCTATTATTGGACTCCGTCGCTACAGCTCCTTATATACGAATATGTCTCTGGAGGTAGCTTGTATGGGCTGCTACATGAAGCATCGGATGACAATGTCCTGCCATGGAATGAGAGGTTCAACATAATTCTCGGCACAGCAAAAGGACTGGCTCACTTACACCAATCAAACACAATCCACTATAACATAAAATCCAGCAATATTCTTATTGATTGCAATGGTCATCCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTCCCAATGTTAGACCGTTATGTTTTAAGCAGCAAAATCCAGAGTGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTGAAGATAACTGAAAAATGCGACATGTACGCCTTTGGTATCTTGATTCTGGAGATAGTTACAGGAAAGAGGCCTGTCGAGTACATGGAAGACGACGTAGCAGTCCTCTGTGACATGGTCCGAGTAGCAGTGGACGACGGAAGAGCCGAAGAATGCATCGACAGTAAGCTGAGGGGGAATTTCCCAGCCGAAGAGGCCGTTCCCGTATTGAAATTAGGCTTGATCTGCACCTCCCACGTGCCATCAAACCGACCCGAAATGAGAGAAATGGTCAAGATACTGGAGATGATCAAATGCCCATCCGAATTACAAGAGTTGGGATAA 2775 44.86 MRALLKMKRLLELFVLFVLAPLCARCLNLSLNDDVLGLIVFKAAVEDPKQNLATWDEDDDSPCNWTGVQCSPRSKRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNLSPNFARVDNLQVIDLSGNNLSGTVPDDFFRQCGSLRVVSLANNKFDGKIPDSLSSCGSLIAVNLSSNQFSGPLPSGVLSLSGLRSLDLSDNALVGEIPKVIENLYNLRTLNLRKNRFSAQIPDGIGSCLLLRSIDLSENSFSGNLPQTMQKLVFCTDLILSRNLLQGNVPEWIGEMKSLETLDFSGNNFTGHIPTTMGNLQYLKVLNLSSNGFTDSFPESVMKCQNLLSVDISHNFIMGNLPAIGSLAKLQFLNLSGNSFVGPIPETIGDLKALRVLDLSRNRLNESIPEVIGGAVSLMELKLDENFLGGELPSSIGHCSSLTTLFTSHNNLTGPIPAELAKLTYLRNVDLSFNNLNGTLPKQLSNLPNLLLFNISHNDLKGELPGGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSISSSLPPSTNLRRNRNILSISALVAIGAAAFIIIGIILITILNSRVQPPTSSLSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSAGAHALLNKDCELGCGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGNVRHQNLVTLEGYYWTPSLQLLIYEYVSGGSLYGLLHEASDDNVLPWNERFNIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGHPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDMYAFGILILEIVTGKRPVEYMEDDVAVLCDMVRVAVDDGRAEECIDSKLRGNFPAEEAVPVLKLGLICTSHVPSNRPEMREMVKILEMIKCPSELQELG 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 542736 545814 + Carg24472-RA Car04g00097 145522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00097 924 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Car04g00097 924 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Car04g00097 924 Pfam Leucine rich repeat 272 327 IPR001611 GO:0005515
Car04g00097 924 Pfam Protein tyrosine and serine/threonine kinase 644 911 IPR001245 GO:0004672|GO:0006468
Car04g00097 924 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Car04g00097 924 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Car04g00097 924 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00097 Car15g00179 CCT
Car04g00097 Car15g00179 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00097 Car-Chr4:542736 Car14g01318 Car-Chr14:11167356 0 dispersed
Car14g00008 Car-Chr14:55752 Car04g00097 Car-Chr4:542736 0 wgd
Car15g00179 Car-Chr15:952707 Car04g00097 Car-Chr4:542736 0 wgd
Car04g00097 Car-Chr4:542736 Car04g00987 Car-Chr4:5691314 0 wgd
Car04g00097 Car-Chr4:542736 Car06g00162 Car-Chr6:982934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88757 PF07714 PK_Tyr_Ser-Thr 1.70E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00097 - - csv:101217762 1519.21