Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00101 ATGGAAATCCCTGATCCATCCAACCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTATTCGCGGTTCATTCCACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGAGTGATCTCGATCTCGTCTCGGACCCTTTCGATGGCCCCTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTATTGTGCACCTTTATGGACATTGAGAAGATCGGATCCAAAATCGACAATGGGTCGTCGTCGAAATCTGAAGGGGCAGACGGCGGCGGTGCTACGGCGGAGAATGTCGATGGGGAGAAAATCTCCCGCCCGAGACACCGTCATAGCAATTCCGCTGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCCGATAAACTTGCAGAGTTGTGGACTATTGATCCTAAGCGAGCTAAGAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCGAAAGAGAGGAAAGCTCGCTACATAATGGAGCTCGAGAGAAAAGTCCAAAGCCTTCAAACCGAAGCAACAACTCTTTCTGCGCAGCTCACATTGTACCAGAGATGTTATAACGAGACGATCGAGAAGTTCCTCCTCATCCACCTTTTGGAGAGGAAGGTTTTTGTGGCAAACGGGGTTGTGTGCATCGATAGAGATACCACAGGGCTTTCAACCGAAAACACCGAGCTCAAACTTCGCTTACAAACTATGGAACAGCAAGCGCATTTACGTGACGCTCTTAACGAAGCATTGAAAAAGGAAGTCGAGCGCCTTAAGATTGCGACGGGGGAACTAATGACAGCTACAGATTCATATAACTTCGGAATGCTTCAAGTTTCACATCCCCAATCTTGCTTTCAGCCCCAACCGCAACCCGAACGACACAACCCGCAAAGGACTCAAAGACCCCAAGTTCATCCATTCCATTCTAGTTTACCAAACCCGCATCAAGCTATGTTCGTTGCATCCCACCAACCACACGCCTTGACAGAAATGTTTCAGCAGGATCCTATCAGCCGATTGCAGGGTCTCGATATCGGTAGCCAAGGCGCAGAAATATAG 1074 49.63 MEIPDPSNQMASSSNPTAPIRGSFHRRAHSEVHFRIPSDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSKSEGADGGGATAENVDGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRCYNETIEKFLLIHLLERKVFVANGVVCIDRDTTGLSTENTELKLRLQTMEQQAHLRDALNEALKKEVERLKIATGELMTATDSYNFGMLQVSHPQSCFQPQPQPERHNPQRTQRPQVHPFHSSLPNPHQAMFVASHQPHALTEMFQQDPISRLQGLDIGSQGAEI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 554890 557797 + Carg24476-RA Car04g00101 145526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00101 357 Coils Coil 248 268 - -
Car04g00101 357 Coils Coil 159 186 - -
Car04g00101 357 MobiDBLite consensus disorder prediction 287 315 - -
Car04g00101 357 MobiDBLite consensus disorder prediction 1 20 - -
Car04g00101 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 192 IPR004827 GO:0003700|GO:0006355
Car04g00101 357 MobiDBLite consensus disorder prediction 287 317 - -
Car04g00101 357 MobiDBLite consensus disorder prediction 100 114 - -
Car04g00101 357 MobiDBLite consensus disorder prediction 1 22 - -
Car04g00101 357 Pfam bZIP transcription factor 143 190 IPR004827 GO:0003700|GO:0006355
Car04g00101 357 MobiDBLite consensus disorder prediction 75 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00663 Car-Chr1:3913993 Car04g00101 Car-Chr4:554890 4.19E-96 dispersed
Car04g00101 Car-Chr4:554890 Car06g01372 Car-Chr6:9863981 4.30E-60 dispersed
Car20g00267 Car-Chr20:1557566 Car04g00101 Car-Chr4:554890 1.20E-33 dispersed
Car02g00508 Car-Chr2:3978344 Car04g00101 Car-Chr4:554890 2.47E-105 wgd
Car04g00101 Car-Chr4:554890 Car04g00991 Car-Chr4:5708876 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3231 PF00170 bZIP_1 8.70E-09 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00101 - - csv:101209388 553.518