Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00102 ATGGCTTCCTCTTCCTCTTCTTCACCATTTCCCTCTCTTCTTCTCCTTCCTTTCTTCCTCTTCCACATCTTTTTTACCTCTGCCTCCGCCGACTACGGCGGCTGGGAGAGCGGCCATGCCACCTTCTACGGCGGCGGAGACGCCTCCGGTACTATGGGTGGAGCATGTGGGTATGGCAACTTGTACAGCCAAGGGTACGGCACCAACACTGTGGCACTAAGCACAGCGCTATTCAACAACGGCCTTAGCTGCGGCGCATGCTACGAAATGACTTGCACAAATGACCCTAAATGGTGCCTACCCGGCACCATCAAGGTCACTGCCACCAACTTCTGCCCCCCCAATTTCGCCCTCCCCAATAACAACGGCGGCTGGTTCACAATTAACGGTCATTCCTACTTCAACCTTGTCCTGATCACGAACGTGGGCGGGGCGGGGGACGTCCACACGGTGTCCATAAAGGGGTCACGAACGGGATGGCAAGCGATGTCACGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATTTGAATGGGCAAGGGCTCTCCTTTCAAGTCACACTCAGCGATGGCAGCACTCTCACAGCCAACAATCTGGTCCCTTCCAATTGGCAGTTTGGCCAAACCTTCGAAGGCCCCCAATTCTAA 648 54.78 MASSSSSSPFPSLLLLPFFLFHIFFTSASADYGGWESGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTIKVTATNFCPPNFALPNNNGGWFTINGHSYFNLVLITNVGGAGDVHTVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGSTLTANNLVPSNWQFGQTFEGPQF 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 560825 561680 + Carg24477-RA Car04g00102 145527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00102 215 Pfam Expansin C-terminal domain 126 201 IPR007117 -
Car04g00102 215 Pfam Lytic transglycolase 70 119 IPR009009 -
Car04g00102 215 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 133 212 IPR007117 -
Car04g00102 215 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 136 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00102 Car-Chr4:560825 Car04g01707 Car-Chr4:9792612 1.24E-105 dispersed
Car05g00269 Car-Chr5:1485984 Car04g00102 Car-Chr4:560825 2.30E-78 dispersed
Car12g00373 Car-Chr12:2376033 Car04g00102 Car-Chr4:560825 1.88E-78 dispersed
Car15g00175 Car-Chr15:932957 Car04g00102 Car-Chr4:560825 1.84E-112 wgd
Car04g00102 Car-Chr4:560825 Car04g00992 Car-Chr4:5714487 3.86E-123 wgd
Car04g00102 Car-Chr4:560825 Car04g02757 Car-Chr4:21230065 4.98E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00102 - K20628 csv:101209633 374.015