Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g00107 | ATGCCAGCTGAATGTCCAAACAAAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCGCGACACACGCTGCATGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATATTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAAATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAATAGTCTAATTTACGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG | 606 | 49.83 | MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 584333 | 585248 | - | Carg24482-RA | Car04g00107 | 145532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g00107 | 201 | Pfam | Lateral organ boundaries (LOB) domain | 46 | 142 | IPR004883 | - | |
Car04g00107 | 201 | MobiDBLite | consensus disorder prediction | 160 | 176 | - | - | |
Car04g00107 | 201 | ProSiteProfiles | LOB domain profile. | 45 | 146 | IPR004883 | - | |
Car04g00107 | 201 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Car04g00107 | 201 | MobiDBLite | consensus disorder prediction | 158 | 188 | - | - | |
Car04g00107 | 201 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Car04g00107 | 201 | Coils | Coil | 125 | 145 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car04g00107 | Car15g00168 | CCT | |
Car04g00107 | Car15g00168 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g00107 | Car-Chr4:584333 | Car15g00168 | Car-Chr15:906004 | 6.44E-66 | dispersed | |
Car04g00107 | Car-Chr4:584333 | Car04g01001 | Car-Chr4:5755961 | 1.70E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3232 | PF03195 | LOB | 2.30E-39 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g00107 | - | - | cmax:111485427 | 376.711 |