Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00107 ATGCCAGCTGAATGTCCAAACAAAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCGCGACACACGCTGCATGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATATTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAAATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAATAGTCTAATTTACGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG 606 49.83 MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 584333 585248 - Carg24482-RA Car04g00107 145532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00107 201 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Car04g00107 201 MobiDBLite consensus disorder prediction 160 176 - -
Car04g00107 201 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Car04g00107 201 MobiDBLite consensus disorder prediction 1 21 - -
Car04g00107 201 MobiDBLite consensus disorder prediction 158 188 - -
Car04g00107 201 MobiDBLite consensus disorder prediction 1 39 - -
Car04g00107 201 Coils Coil 125 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00107 Car15g00168 CCT
Car04g00107 Car15g00168 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00107 Car-Chr4:584333 Car15g00168 Car-Chr15:906004 6.44E-66 dispersed
Car04g00107 Car-Chr4:584333 Car04g01001 Car-Chr4:5755961 1.70E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3232 PF03195 LOB 2.30E-39 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00107 - - cmax:111485427 376.711