Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00118 ATGGATGAAATCCAAACCCCATTTGATTCCAACTCTTGTTGGAAATACCCACTTGGAGATTTTGGGGTTTTGTTGACGAAAACTGCCGATTGGCTCTGTTTTCCAGGGAAGAAGGAGAAGAAACGGAGGTTTTCGAGGAAAACCCCCCATGGGTTTGTTTCTTCTCTTCATTTTGGATTAGTTTTGTTCTTCTTGGTGGTCAGTTTTGTCTGTGTTCAGCCTGTTTTGAGCCAGGATTGGGACGGCGTGGTTGTGACTCAGGCTGATTTTCAATCCCTTCAGGCATTCAAGCAAGAACTTGATGATCCTAAAGGGTTCTTGAAGAGTTGGAATGATAGTGGATTTGGTGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGCGCTAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAGGCCCTTAGGAAGATCAGTTTACATGACAACTTCATTGCTGGATCCATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTCGAGGTGTTCAGTTGTTCAACAATCGATTTTCGGGTTCGATCCCGCCTTCATTGGGTCGTTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACCGGAACAATCCCATCTAGTTTGGCTAACTCCACCAAACTCTATTGGCTTAACTTGAGCTATAACTCGTTTTCCGGTCCGATCCCGACAAGTCTCGCTCAATCAGTGTCCCTTACTTTCCTCGCTCTTCAACACAACAATCTCTCAGGCAGCATTCCCGACTCGTGGGGAAGCGATGCCACCGAGCGGAACCGGGCGTTTCAGCTAAAGTCTTTGACTCTTGATGACAACCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTAAGGTTCAAGTGGTTTCCCTTAGCCACAATAGGCTAAATGGTGGCCTTCCTGATGAACTTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTTTCTAATAATTTCCTTAATGGAAGCATACCCCAAAGTTTTGATAGATTCAGAAATCTGTCTGTTCTCGACTTGAGTAGAAACAGATTCAATGGTCATATACCTTCAACTTTAGGGAACATCTCAACACTTACTCAACTTGATCTATCTCAGAACAATCTAAGTGGAGAAATCCCTGCTTCTCTTGCTGATTTGCAAGCTCTTCAATCCTTAAACGTCTCGTATAACAACCTTTCGGGTTCGGTACCGGTGGCCCTTGCCGAAAAATTCAATGCGAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTGCGATTCAGTGCCTGTCCCCTGCCCCTTCTCAAGAAGTTCCTGCTCCTCCGCTGGAAAGTTCGACATCCCGACATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGATCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTACTGCTGTGCTGCTTGATAAGGAAAAGAGCTGCTTCGAAAGAAAAGGATGGCGGTGAGGCTGCAGCAGCCGGGGCTGTGAGGACCGAGAAGGGCGTCCCTCCGACGGGCAGTGAAGTTGAAGCGGGAGGGGATGCTGGAGGAAAGCTCGTCCATTTCGAGGGGCAAACGGTGTTCACAGCTGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCTACATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAATATACTTGGAAAGATCAGGCATCCAAATCTTCTAGCTTTGAGAGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGCCTCGCAACGTTCCTGCACGCTCGTGGACCGGATACATTCATCGATTGGCCGACGAGGATGAAGATAGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCACACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATAAATGCTAAGATCGCAGATTTTGGCCTGTCAAGGTTGATGACTGCCGCTGCAAGCTCAAATGTGATAGCAACGGCAGGGGCACTCGGGTACCGAGCGCCCGAGCTCTCAAAGCTGAAGAAAGCAAATACAAAAACTGACATTTACAGCCTTGGAGTGATCATATTGGAACTCCTGACTGGAAAGTCCCCCGGTGAAGCCATGAATGGAGTCGATTTGCCGCAATGGGTTGCATCAATTGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATATGGAACTGATGAGGGATGCCTCTACCATTGGAGATGAGTTGCTGAACACGCTAAAACTCGCTTTGCATTGTGTCGATCCATCACCGTCGGCAAGACCAGAAGTTCAACAAGTTCTACAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCCAGTTCTGGGGACGACGGAGCTGGAGGAGGAGGAGGAGGGCCCCCTTCAACAAGTGAGTGA 2562 46.6 MDEIQTPFDSNSCWKYPLGDFGVLLTKTADWLCFPGKKEKKRRFSRKTPHGFVSSLHFGLVLFFLVVSFVCVQPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKISLHDNFIAGSIPSSLGLLPNLRGVQLFNNRFSGSIPPSLGRCPLLQTLHISNNLLTGTIPSSLANSTKLYWLNLSYNSFSGPIPTSLAQSVSLTFLALQHNNLSGSIPDSWGSDATERNRAFQLKSLTLDDNLLSGTIPTSLSKLSKVQVVSLSHNRLNGGLPDELSRLSLLKTLDVSNNFLNGSIPQSFDRFRNLSVLDLSRNRFNGHIPSTLGNISTLTQLDLSQNNLSGEIPASLADLQALQSLNVSYNNLSGSVPVALAEKFNASSFVGNIQLCGFSGAIQCLSPAPSQEVPAPPLESSTSRHRKLSTKDIILIAAGSLLVVLVIVFFVLLCCLIRKRAASKEKDGGEAAAAGAVRTEKGVPPTGSEVEAGGDAGGKLVHFEGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHARGPDTFIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDMELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGGGPPSTSE 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 623801 626457 + Carg24493-RA Car04g00118 145543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00118 853 Pfam Leucine rich repeat 353 413 IPR001611 GO:0005515
Car04g00118 853 Pfam Leucine rich repeat 282 339 IPR001611 GO:0005515
Car04g00118 853 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Car04g00118 853 Pfam Protein tyrosine and serine/threonine kinase 560 825 IPR001245 GO:0004672|GO:0006468
Car04g00118 853 Pfam Leucine rich repeat N-terminal domain 88 127 IPR013210 -
Car04g00118 853 MobiDBLite consensus disorder prediction 509 536 - -
Car04g00118 853 MobiDBLite consensus disorder prediction 828 853 - -
Car04g00118 853 ProSiteProfiles Protein kinase domain profile. 557 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00118 Car-Chr4:623801 Car07g01169 Car-Chr7:7070982 1.55E-12 dispersed
Car19g00003 Car-Chr19:37820 Car04g00118 Car-Chr4:623801 1.81E-09 dispersed
Car14g00028 Car-Chr14:179009 Car04g00118 Car-Chr4:623801 0 wgd
Car20g00263 Car-Chr20:1527659 Car04g00118 Car-Chr4:623801 1.19E-20 wgd
Car04g00118 Car-Chr4:623801 Car04g01016 Car-Chr4:5823672 0 wgd
Car04g00118 Car-Chr4:623801 Car06g00185 Car-Chr6:1115637 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88758 PF07714 PK_Tyr_Ser-Thr 9.20E-41 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00118 - - csv:101214895 1372.84