Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00121 ATGTGCTGTGGTTCTTGGCAAGCTGCGGAGAAGATAAGAATTAGCAATGGTTCAATCACCCTTCATTTAGTGAATGATCAGTTCATGATTCTGGAAAGAGGTCCTTACACAGACTTCCGAATTAGGTCGAGACAAGCGACTTCATCTGACTGCACCTGTTTTCTACGACCTGGTGTTGATATTTGTGTCCTCTCTTCCTCTCGCAGCACGGAAAATACTGATGTGCAAGGTTCAGAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAGCGGAAGCCTCATGATTCTGGGTGTTCATGCCAGTTTTATGTCCAATTATATGCTGCTGATAAAAAACCCCTTGGTTCAGAGAAGGGATCGCTTTGTAAAGAGATCATAGCAATGGGAATTGATCAGATCTTTGTACTCCAAAAGGTTAGGAAACACTTCTGTGAAGATCAACACTACCGATGGGATTTCTCTGAGGACTGCGCTCTGTTGCCAAAAACAAAACTGCTTCTGGGAAAATTTCTGTCCGATCTTTCTTGGTTAGTAGTAACATCAGCATTGAAACATGTCACTTTTGATGTAAGATCAGTGGATAACAAGATCTTGTACCAAGTGTTGGAAAGTAATCAGAAGGGCACTTCAGTAGCTTCTGACAAGATTTTATACGTTGTAAACTTTAGAAATGATGACGGTATGTTTATTCCAATAATACATCAGCTAAATTCATCTGATAGGATTGAGATGTCTCCTGCAGATGATGCATTTGACAGTCAATTGCACTCATTTACTGATCTTATGGACTTGAGGCGTTCAAAACGCCGTAATGTCCAACCTGATCGTTTTCTTGGCTGTGATAGTATCAATGAATCAGAAATTGACTACAGCGGAACCAGGATATATAAAACAGAGCAATTGAATGATGATGATGAGATGACATTACCACTTGCTTACCTGTTTGCCACGAATGCAGGTCCTTCAAAAGTAAAGACGGAAAACGAAAGCAACAATCATTTCAATCAATTGAGTGTACATGATGATCTCTCTGATTTCAAGAGCAGACTAAGATCATTGGAAATGAGTGATGAAGTAGAAGATAAAAATCAACTTGCTATAGTTCCTGTAATTGATGAACAGCCAATAGCATCTGATCCATATCCTGATGATGCCAATGGTTGTGGTAACTTTACAAAACAGATAACTGAAATGTCAGCTAGGTATTACTACATTAACAATAAACGCAAAGTCCGGAAAAGAAACTTTTCAGACTTTGAAGACGAGAACTTTGAGAATTGTAGCTGGGGAAAGGCTTCGAGTAGTAAAGGTAGGAAGACCAGGTATCATTCCATATGTTATAAAGAGGATGGTTCTCCCAAAGAAAGAACTTGGCAGAAACGGTCCTTAGGTGCAGGTGCATACAAGGATTTGATCAATTCCTTCCTGAAGAATATTGACTCAACAATTCAAAAAGAAGAGCCACAGATAATTGATCAATGGAAAGAATTTAAGAACAAAACTTCCTTGGATAAGAGGAACGAGATGGAACTGCCCTCTAATGAGGAGAAGGAAGAGAACTCTGAGATTGAAATGCTGTGGAGAGAAATGGAAATATCCCTTGCCTCAAGTTACCTTATTGATGCTAACCAGGGTTTTAGTAATGGAACATCAGTGGAGCCTGAACAGAAAGAAAGCAAATGGTGCCAGCATGAGTTCAAGTTGAATGAAGAGATAGGGATGCTCTGCCATATATGTGGCTTTGTGAGCACTGAAATTAAAGATGTCTCAGCACCATTTATGCAACACATGAGCTGGAATTCCGAAGAGCGGAGGATTGAAGAAAAAGATGAGCACAATACTGACGATGAGGAGGAGATGAATATTTTCTGTGGCCTGCCTTCTTCTGATGGTACCTTCTCGGAAGAAAATGACAATGTCTGGGCCTTGATCCCTGAATTCAGAAGGAAATTACATCTCCACCAAAAGAAAGCATTCGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCATCTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCAGGAGCTGGAAAAACCTTTCTGATCATCTCATTCCTCGTTAGTTACTTGAAACTGTTTCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTTTATACATGGTATAAGGAATTTATTAAGTGGGAAGTTCCAGTACCAATTCATCTAATACATGGTCGTAGAACGTACCGAGTTTTCCGGTCGAACTCAAAACCAGTCACGTTTGCTGGAGGTCCAAGGCCGACAGACGATGTCATGCACATCTTGGATTGCCTGGAAAAGATAAAGAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTTCTTACATTAATGAGGGAAGATGCAAAATTTGCTCACAGAAAGTACATGGCCAAAGTTTTGCGCCAAAGCCCCGGTATCTTAATATTGGATGAGGGGCATAACCCCAGGAGTACTAAGTCCAGGCTGAGGAAGGTTTTGATGAAAGTTGAAACAGACCTCAGAATACTCCTCTCAGGTACCTTGTTTCAAAATAATTTCTGTGAATATTTCAATACTCTTTGTTTGGCAAGACCTAGGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGGAAGAAAAGAAAAGCTCCACACTTGCAAGAAGCTCGGGCAAGGAAATTCTTTTTAGATAAGATAGCTCGGAAAATTGATGCAGGTGATGGAGAAGAGAGGCAGGAAGGTCTGAACATGCTAAGAAATATGACAAGTGCGTTTATTGATGTTTATGAAGGTGGAAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATACAGCAACAAATTTTGAATAAACTTCATAAGATAATGGCTAAATACCCTGGATATCCCCTTGAGTTAGAGCTCCTCATAACTCTTGGTTCAATCCATCCTTGGTTAGTAAAAACTGCGGTTTGTGCTAGCAAATTTTTCAGTGAGAGGGATCTGATGGAACTAGAAGGATACAAATTTGATTTGAGGAAAGGTTCAAAGGTGATGTTTGTTCTGAATCTTGTGTACCGTGTCGTCAAGAAGGAAAAAATTCTAATCTTCTGCCACAACATTGCACCCGTCAAACTATTCATAGAGCTGTTTGAGAACGTATTTAGGTGGAAGAGAGGCCGAGAAATCTTGGCCCTCACAGGGGACCTTGAGCTATTCGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCCTTAGGGCCATCCAAAGTCTTGCTTGCTTCAATTACTGCTTGCGCAGAAGGCATTAGTTTGACTGCAGCTTCACGAGTCATCTTACTAGACTCCGAGTGGAATCCTTCGAAGACAAAGCAGGCCATCGCTCGAGCTTTCCGTCCAGGCCAGCTTAAGGTGGTCTATGTCTATCAACTACTGGTAACTGGCACATTGGAAGAGGACAAGCACAAGAGAACTACATGGAAGGAATGGGTGTCAAGTATGATTTTCAGTGAGGCGTTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAGTTCTTAGGGAGATGGTGGAGGAAGATAGAGTCAAATCGTTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGAGAAAAGGATTAG 3708 40.88 MCCGSWQAAEKIRISNGSITLHLVNDQFMILERGPYTDFRIRSRQATSSDCTCFLRPGVDICVLSSSRSTENTDVQGSEPVWIDAKISSIERKPHDSGCSCQFYVQLYAADKKPLGSEKGSLCKEIIAMGIDQIFVLQKVRKHFCEDQHYRWDFSEDCALLPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSVDNKILYQVLESNQKGTSVASDKILYVVNFRNDDGMFIPIIHQLNSSDRIEMSPADDAFDSQLHSFTDLMDLRRSKRRNVQPDRFLGCDSINESEIDYSGTRIYKTEQLNDDDEMTLPLAYLFATNAGPSKVKTENESNNHFNQLSVHDDLSDFKSRLRSLEMSDEVEDKNQLAIVPVIDEQPIASDPYPDDANGCGNFTKQITEMSARYYYINNKRKVRKRNFSDFEDENFENCSWGKASSSKGRKTRYHSICYKEDGSPKERTWQKRSLGAGAYKDLINSFLKNIDSTIQKEEPQIIDQWKEFKNKTSLDKRNEMELPSNEEKEENSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKESKWCQHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMSWNSEERRIEEKDEHNTDDEEEMNIFCGLPSSDGTFSEENDNVWALIPEFRRKLHLHQKKAFEFLWKNVAGSMVPALMDQASRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRSNSKPVTFAGGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFVNEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDGEERQEGLNMLRNMTSAFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAKYPGYPLELELLITLGSIHPWLVKTAVCASKFFSERDLMELEGYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVKLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPLGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKHKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 632635 638150 + Carg24496-RA Car04g00121 145546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00121 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 677 878 IPR014001 -
Car04g00121 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1037 1221 IPR001650 -
Car04g00121 1235 Pfam SNF2-related domain 652 935 IPR000330 GO:0005524|GO:0140658
Car04g00121 1235 Pfam Helicase conserved C-terminal domain 1033 1149 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00121 Car15g00156 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01343 Car-Chr2:8880816 Car04g00121 Car-Chr4:632635 7.84E-102 dispersed
Car04g00121 Car-Chr4:632635 Car20g00710 Car-Chr20:4098004 6.71E-78 dispersed
Car04g00121 Car-Chr4:632635 Car02g00242 Car-Chr2:1638898 6.54E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3233 PF00176 SNF2_N 2.90E-17 CL0023 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00121 K10875 - csv:101215377 2160.57