Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00127 ATGGGTGGCAGTTCGCCCTGCGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCTTATTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTGAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGAGGGATCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTTCAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTCCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTCCGAATGTAATCTACGACGCCATTTTTGGACATGACATTGTTTCTTAA 501 48.9 MGGSSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPNCPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 676771 677271 - Carg18389-RA Car04g00127 145552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00127 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Car04g00127 166 Coils Coil 85 105 - -
Car04g00127 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00127 Car-Chr4:676771 Car11g01652 Car-Chr11:12991308 2.94E-55 dispersed
Car15g00168 Car-Chr15:906004 Car04g00127 Car-Chr4:676771 2.51E-46 wgd
Car02g00516 Car-Chr2:4069449 Car04g00127 Car-Chr4:676771 5.69E-66 wgd
Car20g00287 Car-Chr20:1663234 Car04g00127 Car-Chr4:676771 6.94E-55 wgd
Car04g00127 Car-Chr4:676771 Car04g01025 Car-Chr4:5879567 2.04E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3234 PF03195 LOB 4.30E-42 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00127 - - csv:101204801 303.138