Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00144 ATGGACGCCAAGTTTCAGAAGCTTAACGATGGTTCTTTCTTCTCTGCGAGTTCAATTTTGCTTGAACTATCGGCTTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAATGGTTTGGATGTTGATGAACCAAGCTGCTGGTATGGCAGAGGAATTGGATCAAAGAAGATGGCTTTTGAAAAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACTTAATTGGGACAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGTCACTGCTCTTCACTGTGCCACTGCTGGTGGCTCTGGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCAACGGATCGGCCGATGTTGATTGTGTGGATGCTTATGGGAGAAAGCCTGTTGATTTGATTGTTTCAGCTTGTAGGATGGTGAGTAATTCAGGAAGAAAGGCCATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATTTGAGCCTTTACCTTGAAGAAGACCAGCAGAAGATTATAGCTTCCCCGTCTGCCAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTCGATGTATCACTGCCTGATATCAACAGCGGGATGTACGGTACCGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCATATTCGCACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGTGAGAACGCTAGGCGTAGAGACCCCAAGAAGTACCCATATAGCTGCGTTCCGTGCCCCGAATTCCGTAAGGGGGCTTGCCCAAAGGGGGATTCCTGTGAGTATGCACATGGTGTCTTCGAGTCCTGGCTTCACCCTGCTCAATACCGAACCCGTCTCTGCAAGGATGAGACTGGCTGCAACAGGAAAGTTTGCTTCTTCGCTCACAAACATGAAGATTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCACCCAGATCTCTTTCGAGCAGCGCAGCGGATATGTCTACCATGAGCACATTGACTCTTGGTTCGTCATCGTTGTCATTACCGACAACTTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTACGAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCTCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATTTTGAGATGGAATTGCTCGGGTTGGAAAAGAACGCGAGCCAGCTACAACATCAGCAGCAGTTGATCGACGAGATATCTCGACTTTCCACTCCTAATTACTGGAGTGGAGATGTAAGCAGGAGTGCCGAGTTGAAGCCGTCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGCGGCTCGCTAAAAACTTCTCAGGTTCAATCTCCAACCGGGATGCAGATGCGCCAAAATATGAACCAACTCCGTGCAAGCTACCCGGCTAACTTAACATCCTCACCTGTAAAGAAGCCCTCCTCTTTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAAAGTTTCATCGATCGAGCTGCAGTGCCTCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTCTCAGGTTGGAACTCACCCGATGGCAAACTAGACTGGGGAGTACACAGCAACAATCTCAACAAACTCCAGAAATCTGCTTCGTTTGCCATCCGAAACAATGGCATAGGAGGTCCCACAACCTTTGCACCATCCGCAGGGGAGCCCGACGTCTCTTGGGTTAACTCCTTGGTTAAAGACGTTCCCTCCGACAGCTTTGAGCAGTTCGGTGCGAAGAAGCGGCAATACAACCTCAAAAGAGAAATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2010 48.56 MDAKFQKLNDGSFFSASSILLELSASDDVEGFKREVEENGLDVDEPSCWYGRGIGSKKMAFEKRTPLMIAAMFGSSKVVKHLIGTGKVDVNRACGSDMVTALHCATAGGSGSSLETIKLLLNGSADVDCVDAYGRKPVDLIVSACRMVSNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKIIASPSAKEGSDKKEYPVDVSLPDINSGMYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKHEDLRPVYASTGSGMPSPRSLSSSAADMSTMSTLTLGSSSLSLPTTSTPPMSPLASVSSPTNGNLWQNKINLTPPALQLSGSRLKTTLSARDLDFEMELLGLEKNASQLQHQQQLIDEISRLSTPNYWSGDVSRSAELKPSNLDDMFGSLDSSLLSQLQGGSLKTSQVQSPTGMQMRQNMNQLRASYPANLTSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSGWNSPDGKLDWGVHSNNLNKLQKSASFAIRNNGIGGPTTFAPSAGEPDVSWVNSLVKDVPSDSFEQFGAKKRQYNLKREINEMLPSWMEQQLYAEQEQIVA 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 787657 789666 - Carg18372-RA Car04g00144 145569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00144 669 MobiDBLite consensus disorder prediction 320 371 - -
Car04g00144 669 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Car04g00144 669 MobiDBLite consensus disorder prediction 325 371 - -
Car04g00144 669 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Car04g00144 669 Pfam Ankyrin repeats (3 copies) 64 129 IPR002110 GO:0005515
Car04g00144 669 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00144 Car-Chr4:787657 Car14g00415 Car-Chr14:2109824 1.09E-159 dispersed
Car02g00534 Car-Chr2:4159493 Car04g00144 Car-Chr4:787657 0 wgd
Car20g00300 Car-Chr20:1736664 Car04g00144 Car-Chr4:787657 0 wgd
Car04g00144 Car-Chr4:787657 Car04g01038 Car-Chr4:5949558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3236 PF12796 Ank_2 1.50E-07 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00144 - - cmax:111490802 1215.68