Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00146 | ATGGCTTCAATCTCTTTCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGCACTGGCCTCGTGCGAGCCCTTACTTATGATGTCGATGACTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAGGTGCCATCCGAGCTTCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGATTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTCGGTGCTCGACTCAACTGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCTCAAAGAGGTCACTAGATGGGTCAATTAGAATCAGCAATCCAAAGATAATCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACTCTGTGTGGAAGCTGTGGGGGGAACTACAACGCAGATGAGTTTTGGATTGGATGCGACATCTGCGAAAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCAGCCAAGGCAGACAATATCAAGCAGTATAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCATAG | 726 | 47.93 | MASISFSPRTVEDIFKDYSARRTGLVRALTYDVDDFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNCNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSSKRSLDGSIRISNPKIIDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKKGRP | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 800314 | 808583 | - | Carg18370-RA | Car04g00146 | 145571 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00146 | 241 | MobiDBLite | consensus disorder prediction | 141 | 161 | - | - | |
| Car04g00146 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - | |
| Car04g00146 | 241 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355|GO:0042393 | |
| Car04g00146 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 236 | IPR013083 | - | |
| Car04g00146 | 241 | PANTHER | CPG BINDING PROTEIN | 1 | 240 | IPR045104 | GO:0006355|GO:0042393 | |
| Car04g00146 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
| Car04g00146 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 239 | IPR011011 | - | |
| Car04g00146 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
| Car04g00146 | 241 | Pfam | PHD-finger | 188 | 236 | IPR019787 | - | |
| Car04g00146 | 241 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 1 | 240 | - | - | |
| Car04g00146 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00146 | Car-Chr4:800314 | Car17g00661 | Car-Chr17:6128488 | 6.13E-102 | dispersed | |
| Car14g00046 | Car-Chr14:276804 | Car04g00146 | Car-Chr4:800314 | 4.88E-86 | wgd | |
| Car04g00146 | Car-Chr4:800314 | Car04g01040 | Car-Chr4:5967203 | 1.98E-116 | wgd | |
| Car04g00146 | Car-Chr4:800314 | Car06g00201 | Car-Chr6:1192735 | 1.79E-113 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3237 | PF12165 | Alfin | 1.10E-66 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00146 | - | - | csv:101211934 | 464.536 |