Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00146 ATGGCTTCAATCTCTTTCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGCACTGGCCTCGTGCGAGCCCTTACTTATGATGTCGATGACTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAGGTGCCATCCGAGCTTCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGATTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTCGGTGCTCGACTCAACTGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCTCAAAGAGGTCACTAGATGGGTCAATTAGAATCAGCAATCCAAAGATAATCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACTCTGTGTGGAAGCTGTGGGGGGAACTACAACGCAGATGAGTTTTGGATTGGATGCGACATCTGCGAAAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCAGCCAAGGCAGACAATATCAAGCAGTATAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCATAG 726 47.93 MASISFSPRTVEDIFKDYSARRTGLVRALTYDVDDFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNCNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSSKRSLDGSIRISNPKIIDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 800314 808583 - Carg18370-RA Car04g00146 145571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00146 241 MobiDBLite consensus disorder prediction 141 161 - -
Car04g00146 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Car04g00146 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Car04g00146 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Car04g00146 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Car04g00146 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Car04g00146 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Car04g00146 241 CDD PHD_AL_plant 187 237 IPR044104 -
Car04g00146 241 Pfam PHD-finger 188 236 IPR019787 -
Car04g00146 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Car04g00146 241 SMART PHD_3 187 235 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00146 - - - csv:101211934 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00146 Car-Chr4:800314 Car17g00661 Car-Chr17:6128488 6.13E-102 dispersed
Car14g00046 Car-Chr14:276804 Car04g00146 Car-Chr4:800314 4.88E-86 wgd
Car04g00146 Car-Chr4:800314 Car04g01040 Car-Chr4:5967203 1.98E-116 wgd
Car04g00146 Car-Chr4:800314 Car06g00201 Car-Chr6:1192735 1.79E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00783 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 1.6e-111 399.4
Car12g00605 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.0e-96 349.4
Car05g00354 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 5.9e-93 337.8
Car12g01285 . 9 243 Alfin-like Transcription Factor Family AT1G14510 69.9 7.7e-93 337.4
Car04g00815 . 4 213 Alfin-like Transcription Factor Family AT1G14510 83.3 2.7e-90 328.9
Car17g00661 CST 10 249 Alfin-like Transcription Factor Family AT1G14510 66.4 1.8e-89 326.2
Car05g01330 . 9 268 Alfin-like Transcription Factor Family AT1G14510 61.0 3.2e-83 305.4
Car04g00146 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 4.5e-77 285.0
Car06g00201 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.0 1.3e-71 266.9
Car08g00668 CST 10 159 Alfin-like Transcription Factor Family AT1G14510 78.0 2.3e-65 246.1
Car14g00046 CST 8 135 Alfin-like Transcription Factor Family AT1G14510 76.2 1.7e-55 213.4
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT1G14510 66.7 3.5e-53 205.7
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.3e-108 389.0
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.3e-108 389.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT5G26210 74.4 5.2e-105 377.9
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT5G26210 66.1 1.0e-97 353.6
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT5G26210 64.2 1.3e-95 346.7
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 2.7e-93 339.0
Car04g00146 . 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 4.4e-80 295.0
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G26210 73.2 8.6e-76 280.8
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.5 2.9e-71 265.8
Car08g00668 CST 1 155 Alfin-like Transcription Factor Family AT5G26210 76.1 5.1e-68 255.0
Car14g00046 CST 8 150 Alfin-like Transcription Factor Family AT5G26210 68.0 1.4e-54 210.3
Car04g01040 . 9 150 Alfin-like Transcription Factor Family AT5G26210 67.1 9.3e-54 207.6
Car12g00605 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 2.9e-100 362.1
Car05g00354 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.4e-99 359.0
Car12g01285 . 1 243 Alfin-like Transcription Factor Family AT3G42790 71.3 3.0e-97 352.1
Car17g00661 CST 1 251 Alfin-like Transcription Factor Family AT3G42790 61.9 2.2e-92 335.9
Car16g00783 . 3 255 Alfin-like Transcription Factor Family AT3G42790 70.0 3.5e-90 328.6
Car05g01330 . 1 270 Alfin-like Transcription Factor Family AT3G42790 61.3 8.7e-89 323.9
Car04g00146 . 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.5e-80 296.6
Car06g00201 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.4 1.1e-72 270.4
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT3G42790 69.8 7.4e-72 267.7
Car08g00668 CST 1 150 Alfin-like Transcription Factor Family AT3G42790 74.2 9.7e-64 240.7
Car14g00046 CST 8 145 Alfin-like Transcription Factor Family AT3G42790 68.6 7.7e-53 204.5
Car04g01040 . 9 145 Alfin-like Transcription Factor Family AT3G42790 69.1 2.2e-52 203.0
Car04g00146 . 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.6e-110 394.0
Car06g00201 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 70.5 2.6e-98 355.5
Car12g00605 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 66.1 4.8e-92 334.7
Car12g01285 . 8 243 Alfin-like Transcription Factor Family AT5G05610 66.1 5.5e-88 321.2
Car05g00354 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 7.1e-88 320.9
Car17g00661 CST 10 251 Alfin-like Transcription Factor Family AT5G05610 63.0 2.7e-87 318.9
Car16g00783 . 9 255 Alfin-like Transcription Factor Family AT5G05610 63.3 1.6e-84 309.7
Car05g01330 . 8 270 Alfin-like Transcription Factor Family AT5G05610 57.7 4.2e-80 295.0
Car04g01040 . 1 177 Alfin-like Transcription Factor Family AT5G05610 75.3 5.9e-74 274.6
Car04g00815 . 4 215 Alfin-like Transcription Factor Family AT5G05610 61.8 8.2e-68 254.2
Car14g00046 CST 1 157 Alfin-like Transcription Factor Family AT5G05610 75.9 1.2e-66 250.4
Car08g00668 CST 10 181 Alfin-like Transcription Factor Family AT5G05610 63.6 6.5e-57 218.0
Car04g00146 . 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 9.3e-93 337.0
Car06g00201 CST 43 239 Alfin-like Transcription Factor Family AT3G11200 72.3 1.2e-79 293.5
Car12g00605 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 64.9 3.9e-75 278.5
Car05g01330 . 59 270 Alfin-like Transcription Factor Family AT3G11200 62.4 4.3e-74 275.0
Car17g00661 CST 44 251 Alfin-like Transcription Factor Family AT3G11200 63.5 5.3e-72 268.1
Car05g00354 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.0e-71 266.2
Car12g01285 . 44 243 Alfin-like Transcription Factor Family AT3G11200 63.9 2.6e-71 265.8
Car16g00783 . 44 255 Alfin-like Transcription Factor Family AT3G11200 64.8 1.1e-69 260.4
Car04g00815 . 1 215 Alfin-like Transcription Factor Family AT3G11200 61.9 7.2e-69 257.7
Car04g01040 . 43 177 Alfin-like Transcription Factor Family AT3G11200 82.4 2.5e-61 232.6
Car14g00046 CST 43 157 Alfin-like Transcription Factor Family AT3G11200 81.0 1.7e-49 193.4
Car08g00668 CST 44 162 Alfin-like Transcription Factor Family AT3G11200 70.8 2.0e-42 169.9
Car16g00783 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 6.6e-76 281.2
Car12g00605 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 5.3e-65 245.0
Car12g01285 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 9.0e-65 244.2
Car05g00354 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.0e-64 243.0
Car08g00668 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.2e-62 235.7
Car17g00661 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.2e-62 235.7
Car04g00815 . 4 123 Alfin-like Transcription Factor Family AT2G02470 85.8 7.6e-56 214.5
Car05g01330 . 1 178 Alfin-like Transcription Factor Family AT2G02470 62.9 1.7e-55 213.4
Car14g00046 CST 8 165 Alfin-like Transcription Factor Family AT2G02470 66.0 5.5e-54 208.4
Car04g00146 . 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 7.9e-53 204.5
Car04g01040 . 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 7.9e-53 204.5
Car06g00201 CST 8 174 Alfin-like Transcription Factor Family AT2G02470 61.5 7.9e-53 204.5
Car12g00605 CCT,ECH 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 3.0e-73 271.9
Car12g01285 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 4.3e-72 268.1
Car05g00354 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 6.2e-71 264.2
Car08g00668 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 3.4e-69 258.5
Car17g00661 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.9e-68 255.4
Car16g00783 . 9 168 Alfin-like Transcription Factor Family AT5G20510 72.8 1.9e-64 242.7
Car05g01330 . 1 184 Alfin-like Transcription Factor Family AT5G20510 61.1 2.3e-57 219.2
Car04g00146 . 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.4e-53 205.3
Car14g00046 CST 4 170 Alfin-like Transcription Factor Family AT5G20510 59.0 2.9e-52 202.2
Car04g01040 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.2e-51 198.4
Car06g00201 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 61.8 2.1e-50 196.1
Car04g00815 . 4 128 Alfin-like Transcription Factor Family AT5G20510 70.9 3.1e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3237 PF12165 Alfin 1.10E-66 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00146 Car_Chr04 FPKM 1.454545 1.188048 0.480898 0.46312 0.614021 0.88859 0.521115 0.0 0.0 0.0