Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00154 ATGGTTTCCATATATCGTGATCGGACGTCGGAGTTTCGGTCGCTATCGGATACGCTGAGGAAGATTGCCGGAGTCACAGCCGACGTCCATCCAGTTCAAAATGAACCATCGGCGTCCGTACTCTCCGGATCACCGGGCTTTGCACGGTCTGAATTCAGCAGGAAGGCATCTCTTATCGGCTGGGGAATCCAAGAAGCCTCTCAGAAGATCGCGAGGCTTGCTCAGTCAATTACAAAACACATACTAAGAATGATAACTAGGGCTCGTTTTGTCCTTCTGAACTCTGCAGTAGCAAAAAGATCATCGATGTTTGATGATCCAATCAGGGAAATCCAGGAAATGACTGCTTTGATTAAGAATGATATTACATCATTGAATGTAGCTATCTCAGATTTGCAAGCCATCCAAACGATGGAGATAGCAGAGGGGAATTATTCAGAGGACAGAGTTGTTCATTCAACCGCTGTCTGCGATGACCTCAAGAGTAAACTCATGGGAGCTACAAAACAACTTCAAGATGTGTTAACTGCAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTCTCTGCAAATGCAACTAGAGAAAGTCCTTTTCAAAATCAAGCTAAAACTGTAACTCAACCTCCACCTTGGTTAAGTAATACATCTGAAAGTGCTCAATCATCCTTACGAAGGCTAGCTGTGGAGGTCATCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAACTATTTACAAAGTCGGGCAGGTGCTCTCCACAATGTGGAATCCACCATTTCAGAACTGGGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAACATGGATGAATCAATGGCGAATGTAGAAGGTGCTCGAACCTCTCTCTTTAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATCAAAATATTTGTGATTTTAATCATTTTCTTGATGCTCTTTATTTTCTTGGCATAA 1035 43.0 MVSIYRDRTSEFRSLSDTLRKIAGVTADVHPVQNEPSASVLSGSPGFARSEFSRKASLIGWGIQEASQKIARLAQSITKHILRMITRARFVLLNSAVAKRSSMFDDPIREIQEMTALIKNDITSLNVAISDLQAIQTMEIAEGNYSEDRVVHSTAVCDDLKSKLMGATKQLQDVLTARTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWLSNTSESAQSSLRRLAVEVIPSQQMEMSMLQQVVPRQENYLQSRAGALHNVESTISELGGIFTHLATMVAHQGELAIRIDDNMDESMANVEGARTSLFRHLNQISSNRWLLIKIFVILIIFLMLFIFLA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 847175 849509 - Carg18362-RA Car04g00154 145579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00154 344 Pfam SNARE domain 290 341 IPR000727 -
Car04g00154 344 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Car04g00154 344 ProSitePatterns Syntaxin / epimorphin family signature. 259 298 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car04g00154 344 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 253 315 IPR000727 -
Car04g00154 344 MobiDBLite consensus disorder prediction 194 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00154 Car-Chr4:847175 Car12g00284 Car-Chr12:1869253 7.15E-81 dispersed
Car04g00154 Car-Chr4:847175 Car04g01051 Car-Chr4:6024702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00154 K08490 - csv:101213786 462.225