Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00182 ATGGCAAGTCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCACCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCGGATGAAGAAAACAACTCCGGCAGCTATGAGAGAGCTGAACCAGGCACCGGCTCCACCACGCGCCGCCCACGTGGTCGGCCGCCGGGATCCAAAAACAAGATGAAGCCTCCGGTGGTAGTCACCAAGGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCGAACTTCGCTCAACGCCGCCAGCGAGGGGTTTCTGTCCTCAGTGGAAATGGGGTTGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCAACGTTATTACTCTACAGGGACGGTTTGATATATTGTCGCTCTCCGGTGCCTTTTTGCCTTCCCCTGCTCCACCAGGGGCTACCGGACTAACAGTCTACTTGGCTGGTGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTCGGTGCTCTCATCGCAACCGGTCCAGTTATTGTCATCGCTGCTACCTTCACCAATGCCACATACGAGCGGCTACCGCTTGAGGATGAGGAGGCAGCTGCCGGAGACAAGTCCGGAAATAGCCAAAACAATTCAACTTCTCAGAGCATGGGGGATCAGCAACAGCAGCAGCCTTCAATGGGAAATTACAATATGACTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCTCATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTCTAA 804 54.35 MASRWWAENIPTTTDSSTTNPYSTPLKQSLEAADEENNSGSYERAEPGTGSTTRRPRGRPPGSKNKMKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGNVITLQGRFDILSLSGAFLPSPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATYERLPLEDEEAAAGDKSGNSQNNSTSQSMGDQQQQQPSMGNYNMTSNLVPNGQVSSHDVFWSPPRAPPPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1007855 1008658 + Carg18334-RA Car04g00182 145607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00182 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Car04g00182 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Car04g00182 267 MobiDBLite consensus disorder prediction 207 267 - -
Car04g00182 267 Gene3D - 81 210 - -
Car04g00182 267 MobiDBLite consensus disorder prediction 1 48 - -
Car04g00182 267 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Car04g00182 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 - -
Car04g00182 267 MobiDBLite consensus disorder prediction 1 76 - -
Car04g00182 267 PIRSF ESCAROLA 8 265 IPR014476 GO:0003680
Car04g00182 267 MobiDBLite consensus disorder prediction 212 255 - -
Car04g00182 267 CDD DUF296 82 165 IPR005175 -
Car04g00182 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00182 Car-Chr4:1007855 Car06g01150 Car-Chr6:8516857 7.42E-72 dispersed
Car15g00111 Car-Chr15:651206 Car04g00182 Car-Chr4:1007855 4.49E-71 wgd
Car04g00182 Car-Chr4:1007855 Car04g01075 Car-Chr4:6193419 3.13E-169 wgd
Car04g00182 Car-Chr4:1007855 Car04g02832 Car-Chr4:21551383 3.42E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00182 - - csv:101217530 436.802