Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00183 ACAATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGAGGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTTGCGTTGCAACAAGAGATTATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTACAGTCGTTGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAATTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAATTGCTCTCTCAACTGCCGAATTTAGATCGAGTTGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTCGATGTAGCAATTGATGAAAACTTTGCTTATCTATGGTAG 651 41.32 TMTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNLDRVEINDAQMISPLFCIGEEDGFFGCNPNNAMENSAFDVAIDENFAYLW 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1010728 1011501 - Carg18333-RA Car04g00183 145608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00183 216 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Car04g00183 216 Coils Coil 99 126 - -
Car04g00183 216 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00183 Car-Chr4:1010728 Car08g00835 Car-Chr8:5589206 1.06E-47 dispersed
Car19g00060 Car-Chr19:522150 Car04g00183 Car-Chr4:1010728 2.92E-43 dispersed
Car04g00183 Car-Chr4:1010728 Car04g01076 Car-Chr4:6196966 7.30E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3240 PF03195 LOB 7.70E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00183 K13945 - csv:101204875 283.878