Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00193 | ATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAACACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGTCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTATCGAAGGGTGCCATGCCGGAAACAGGGAGGAATTAGGTTCACAATCAACGGCTTCCGGTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGAGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTAGGTCAGTCACTGTCGTTCAGGGTTACATCCAGTGACCGTCGCACCACCACTTCGTGGAACATCGTCCCTTCCAATTGGCAGTTTGGCCAGACCTTCACCGGCAAGAATTTCAGGGTCTGA | 774 | 53.36 | MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFTGKNFRV | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1056885 | 1059009 | + | Carg18323-RA | Car04g00193 | 145618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00193 | 257 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 49 | 163 | IPR007112 | - | |
| Car04g00193 | 257 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 173 | 252 | IPR007117 | - | |
| Car04g00193 | 257 | Pfam | Expansin C-terminal domain | 164 | 241 | IPR007117 | - | |
| Car04g00193 | 257 | Pfam | Lytic transglycolase | 66 | 153 | IPR009009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g01078 | Car-Chr3:8772489 | Car04g00193 | Car-Chr4:1056885 | 3.62E-93 | dispersed | |
| Car04g00193 | Car-Chr4:1056885 | Car04g02553 | Car-Chr4:20180730 | 3.02E-140 | dispersed | |
| Car15g00262 | Car-Chr15:1437362 | Car04g00193 | Car-Chr4:1056885 | 5.78E-119 | dispersed | |
| Car15g01071 | Car-Chr15:8423647 | Car04g00193 | Car-Chr4:1056885 | 3.60E-93 | dispersed | |
| Car19g00632 | Car-Chr19:7703571 | Car04g00193 | Car-Chr4:1056885 | 6.80E-92 | dispersed | |
| Car01g00552 | Car-Chr1:3258039 | Car04g00193 | Car-Chr4:1056885 | 5.89E-169 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car04g00193 | Car-Chr4:1056885 | 2.85E-169 | wgd | |
| Car02g00576 | Car-Chr2:4394601 | Car04g00193 | Car-Chr4:1056885 | 7.76E-174 | wgd | |
| Car20g00342 | Car-Chr20:1954549 | Car04g00193 | Car-Chr4:1056885 | 1.40E-169 | wgd | |
| Car03g00371 | Car-Chr3:4536607 | Car04g00193 | Car-Chr4:1056885 | 3.88E-167 | wgd | |
| Car04g00193 | Car-Chr4:1056885 | Car04g01084 | Car-Chr4:6245571 | 1.40E-146 | wgd | |
| Car04g00193 | Car-Chr4:1056885 | Car07g00978 | Car-Chr7:5558020 | 4.58E-166 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00193 | - | - | csv:101218950 | 504.982 |