Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00202 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATCGTAGGTCGTCCTCGCCACACTGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCACCAGAGGAACACCCAGTTCTCCTAACCGAGGCTCCTCTTAATCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACATTCAATACTCCAGCCATGTACGTGGCCATTCAAGCTGTTCTTTCCTTGTATGCAAGTGGACGTACAACTGTAGAATTTGTTGCGTGTTTGGCCTTGGCTTACTCGTTCTTTGTGTTTGTCTTCGAAGGAATTGTGATGGACTCTGGTGATGGTGTCAGTCATACGGTTCCTATATACGAGGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGATCTGGCGGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACATCTGCAGAGCGGGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCGTCTGTCGAAAAGAGCTATGAATTGCCTGATGGACAGGTGATCACCATCGGATCGGAGAGATTCAGATGTCCTGAAGTTCTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCACCGGCATCGCTGATAGAATGAGCAAGGAAATCTCTGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCGCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCCTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1191 47.02 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVEFVACLALAYSFFVFVFEGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1112923 1115033 + Carg18314-RA Car04g00202 145627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00202 396 ProSitePatterns Actins signature 2. 377 385 IPR004001 -
Car04g00202 396 Pfam Actin 5 396 IPR004000 -
Car04g00202 396 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car04g00202 396 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00202 Car-Chr4:1112923 Car15g00367 Car-Chr15:1924229 0 dispersed
Car04g00202 Car-Chr4:1112923 Car04g01093 Car-Chr4:6303981 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00202 K10355 - csv:101220611 733.021