Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00208 ATGTCCTCACCGGTGAACCTCACCGATAATTTCTCCGGCGACGATGTACATGAATGGATGTTAGGCAACTTGCTTGAATTGTCCTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGGTGTTTAACTGATGGAGAGATGAACTATGATAGTTCCTCTAGAATTGAAAACAAGCGTGGCCATCAATGGTTTATGGATGGCAGTGCACCAGAGTTATTCAGTAGCAAGAAGCAAGCAATAGAAACTGTAAATACTAGAACTGTTCCAGGCGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGTTTTCAATCAGTTCCTGGGCCCTTCACTGATCGCCTCTTTGGCTCCGAGCCAATACGAACAGTCAATTTGGTTGATAGAAGCATCACTGTTGGAAATGCAAATATGGACATGGGAAGAAAGGAGTTTGAGAATCATTTTGCAAACAACCCGTCAGTTGGCTTGTCCATGTCACAATCCATTGAGGATCCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAGGTTAAAGTCAATCAAGTCAGGGACGCTGACATTGGCATGTCTGCCTCTTTGGGACATGCCTATAGCAGCAGGGGTGATGGTACAGTTTCAATGGGTACAGCATTTAAGAAAATTCATGAGAACGCCATATCATTGGGCCAATCTTATAATAGTAGAGATGAGAATAGCATCTCGGTTGGCCCTGCATATCACAAGACAGATGATAGTTTTATTTCAATGGGTCATGCTTTCAGCAAGGGTGATGGAAATTTTATTACAAATGGTCATAACTATAGCAAGGGAGACAATAGCATCCTATCGATGAGTCAGCCTTTTGACAAGGGGGATTACTCTTTTATTTCAATGGGTCAGTCTTATGAGAAGGCAGAAGGCAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGCATGAAAATTTTATCTCAATGGGGCCAGCCTATAGTAAGGCAGGTGATACTTTCATTTCAATGGCTTCCCCCTATAATAAGGGAAATGATGATATATCAATGGGTCCAACCTATGACAAGGTGAACTCTGATATTGTACATGTGGGTCCCAAATATGACAAAGCAGATACTGGTGCTGTGTCTATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGGTTTGATGATGAGAATGCGGCGGATAATCCATCTGGTGGGATCATTAGCAGTTACGACTTGTTGATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTGTCAAACCTGAGAGATTCAGTTGATCCTCATGCGGAAGTAAACTTTAATAATGCTACAAAAGTTGATGTTAAGATTGACACAAGTTCCAAGAATAAAGAGCCTAGGACGACTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAACTGCAATCATTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCATGCTGGCTGCAAAACCAAACATCCAAACAATCACATCTATTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTGAAGAACACCCCTCAGGAGTTGTTATTTGATGTAATTCAGAATGTGACTGGTTCTCCCATTAATCAGAAGAATTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGACGAAGTAACTATTCCTTCTTGA 1830 41.37 MSSPVNLTDNFSGDDVHEWMLGNLLELSFQHKSFWIPRDAGCLTDGEMNYDSSSRIENKRGHQWFMDGSAPELFSSKKQAIETVNTRTVPGVPHMNVSPWENTSSFQSVPGPFTDRLFGSEPIRTVNLVDRSITVGNANMDMGRKEFENHFANNPSVGLSMSQSIEDPSSCLNFGGIRKVKVNQVRDADIGMSASLGHAYSSRGDGTVSMGTAFKKIHENAISLGQSYNSRDENSISVGPAYHKTDDSFISMGHAFSKGDGNFITNGHNYSKGDNSILSMSQPFDKGDYSFISMGQSYEKAEGNIISFGASYNKGHENFISMGPAYSKAGDTFISMASPYNKGNDDISMGPTYDKVNSDIVHVGPKYDKADTGAVSMAHNYHKGESNTISFGGFDDENAADNPSGGIISSYDLLMANQASAQASEVSNLRDSVDPHAEVNFNNATKVDVKIDTSSKNKEPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDVIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVTIPS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1159173 1165257 - Carg23797-RA Car04g00208 145633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00208 609 Pfam Tify domain binding domain 502 557 IPR032308 -
Car04g00208 609 MobiDBLite consensus disorder prediction 451 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00208 - - - cmax:111472013 1201.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00208 Car-Chr4:1159173 Car02g01151 Car-Chr2:7906975 1.65E-17 dispersed
Car14g00139 Car-Chr14:648141 Car04g00208 Car-Chr4:1159173 3.18E-44 wgd
Car02g00597 Car-Chr2:4517071 Car04g00208 Car-Chr4:1159173 1.78E-20 wgd
Car20g00370 Car-Chr20:2061582 Car04g00208 Car-Chr4:1159173 5.51E-40 wgd
Car04g00208 Car-Chr4:1159173 Car04g01102 Car-Chr4:6347091 0 wgd
Car04g00208 Car-Chr4:1159173 Car06g00270 Car-Chr6:1526693 6.45E-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00139 CST 124 945 PHD Transcription Factor Family AT3G53680 53.3 5.1e-250 861.3
Car06g00270 CST 18 837 PHD Transcription Factor Family AT3G53680 53.5 1.1e-249 860.1
Car04g00208 . 464 590 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 155.2
Car20g00370 CST 306 444 PHD Transcription Factor Family AT3G53680 51.8 5.3e-37 153.7
Car04g01102 . 533 659 PHD Transcription Factor Family AT3G53680 54.3 2.0e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00208 Car_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308