Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00240 ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAGAAGCAGCAGGTTCACAAGGAAGACGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGGGGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACAAACAATTACATTCTCATTTCGAGAGTTGGCAGCTGCAACGAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGACTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGACTACAAGGAAACAGGGAGTTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAGAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTTCCACCCGATAAAAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTCGGTGAAGATTACCATCCCAAGTTATCCGATTTTGGCTTAGCAAAATTGGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAGTATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTCGTTCTGCTTGAAATTATTACTGGCAGAAAAGCGATCGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTAGCATGGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTGGCAGATGGCTGATCCATTGCTCCAAGGACAGTACCCAGTCAGAGGCTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCCGATGTCGTCACAGCCCTGACATACCTTGCCTCCCAAAAATTCGATCCCGAACCCCAGACAGTTCAAAACACTCACAGTAGCTCGTCTACCCCTAGATCTTCTAGAAGAGAACTGTGA 1140 43.33 MGWFLCSGSSNKKEKKQQVHKEDDPIPSTSEKLMVKGSFNGKNEALKDGSSDQISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKFDPEPQTVQNTHSSSSTPRSSRREL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1334393 1338112 + Carg23763-RA Car04g00240 145665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00240 379 MobiDBLite consensus disorder prediction 1 32 - -
Car04g00240 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Car04g00240 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Car04g00240 379 MobiDBLite consensus disorder prediction 358 379 - -
Car04g00240 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00240 379 Pfam Protein tyrosine and serine/threonine kinase 78 344 IPR001245 GO:0004672|GO:0006468
Car04g00240 379 MobiDBLite consensus disorder prediction 358 372 - -
Car04g00240 379 MobiDBLite consensus disorder prediction 13 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00240 Car-Chr4:1334393 Car06g01271 Car-Chr6:9107178 0 dispersed
Car13g00138 Car-Chr13:1238259 Car04g00240 Car-Chr4:1334393 2.15E-14 wgd
Car04g00240 Car-Chr4:1334393 Car04g01328 Car-Chr4:7690763 0 wgd
Car04g00240 Car-Chr4:1334393 Car06g00292 Car-Chr6:1634804 1.07E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88762 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00240 - - csv:101221705 697.967