Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00252 ATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCGCCGCCGCCACCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTGCCGGAATGCCAAAGAACAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGGGTACGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCCTTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGA 612 56.37 MAYVAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPLWASHLADTTCFLDDATLSAPWEPLWT 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1433576 1434450 + Carg25670-RA Car04g00252 145677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00252 203 MobiDBLite consensus disorder prediction 1 24 - -
Car04g00252 203 Coils Coil 131 165 - -
Car04g00252 203 ProSiteProfiles LOB domain profile. 51 152 IPR004883 -
Car04g00252 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 178 - -
Car04g00252 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 41 178 - -
Car04g00252 203 Pfam Lateral organ boundaries (LOB) domain 52 149 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00252 Car-Chr4:1433576 Car02g00017 Car-Chr2:178245 5.93E-50 dispersed
Car13g00164 Car-Chr13:1477601 Car04g00252 Car-Chr4:1433576 1.11E-70 wgd
Car15g00405 Car-Chr15:2108674 Car04g00252 Car-Chr4:1433576 1.20E-68 wgd
Car02g00632 Car-Chr2:4759375 Car04g00252 Car-Chr4:1433576 2.99E-78 wgd
Car20g00407 Car-Chr20:2301707 Car04g00252 Car-Chr4:1433576 2.64E-80 wgd
Car04g00252 Car-Chr4:1433576 Car04g01337 Car-Chr4:7754472 1.01E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3245 PF03195 LOB 2.10E-39 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00252 - - bhj:120081845 311.227