Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00296 ATGAGTGGATGGGATAGGGTTGGATCGTCGAGTTCGAGATTGGGCCGTGGCAATTCTTCCATGCCTGAGAGGACCTCCTCTTCTAACACGGTTCGACTCGGTCGAGTCCAGCCACAGGCGCCTGGATATCGCACCATCTTCTGTAATGATCGCGACGCCAATCTCCTTATCAAATTCAAGGGGAATTCAGTTTCGACCACAAAGTACAACTTCTTCACGTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATCACAAATGTGGTCCCTTTAAGTCTGGTTCTACTTGTTTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCCTGGAAAAAGTTGCAGGTTGGGGACATTGTTAGGATTCGGCAAGATGGATTCTTTCCTGCAGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGATGGGGAGACAAATTTGAAGATTAGAAAGGCCCTGGAAAAGACATGGGATTACTTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACTGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTGTTGCGAGGATGCAGTCTCAGGAACACGGAATATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACACTGGAGAAAAAACTTGACAAACTTATTCTTACGCTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAACCCTAGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTTATTACTCTGTATTCAACCATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATAAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACTCCTGCATTGGCTAGAACTTCCAATCTGAATGAAGAACTGGGGCAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGCACTGGTGTCACTGAAATAGAGAGGGGAATTGCTGAGCAGAACGGCTTGAAAGTGGAAGAGGAGCACAAATCAGCCAGTGCTTTACAGGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAATCCAACTCTGATCTCTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACTGTACTCCCTGAGGGCGATGAATCCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCGTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAAAAGATGGGTAAAATTCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTTATATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATATAACGAGGGAACACTTGGAGAAATTTGGATCGTCCGGTTTGAGAACTCTATGTCTTGCTTATAGAGACTTGCATCCCGATATGTATGAAACCTGGAATGAGAAATTTATTCAAGCTAAGTCTTCACTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATCGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCCGGTATCAAGATTTGGATGCTAACGGGAGACAAGATGGAAACTGCTATAAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACAGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAGCTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAATCTATGTCTCCACCAAAATTAGCACTTGTCATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCAAAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGTATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTTGTACATGGACGATGGTCATATCTTAGAATCTGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACGGCCCTACCTGTAATAATGGTCGGACTATTTGACAAGGATGTTAGTGCGGCCCTATCTAAAAAGTACCCCGAGCTCTATAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTAACAACTTGGGCCATCTTTTCCGTCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCCAGTTCCAGCAGTCAATCGGCATCTGGCAAAGTGTTTGGTCTATGGGATATCAGCACGATGACTTTCACATGCATTGTAGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACTAGGTGGCATTACATAACGGTTGGGGGAAGCATTTTAGCATGGTTCATGTTTATTTTGCTATATTCTGGTCTTATGACACCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCCTAATGAGCACACTCTATTTTTACGTAGCTGTCCTCCTTGTCCCTGTCGTTGCGCTTCTTTGTGATTTTGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTATGATTATCAGATAGTTCAAGAAATTCATAGGCATGAACCTGATGGTAGAAGTGCGGTAGGATTGTTGGAGATTCCGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGGGAGTTATCGAAGCACACTGGCTTTGCTTTCGATTCACCTGGCTATGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCCAGGAGAGCCAGTGTGAAGTCAAGACTAAAGATTAGGGAAAAGAAATGA 3681 40.89 MSGWDRVGSSSSRLGRGNSSMPERTSSSNTVRLGRVQPQAPGYRTIFCNDRDANLLIKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKKLQVGDIVRIRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGVFVNEKYYYLALDKGGENQFNPSNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGVTEIERGIAEQNGLKVEEEHKSASALQEKGFNFDDARLMRGAWRNESNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNDDLKNITREHLEKFGSSGLRTLCLAYRDLHPDMYETWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWMLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFTREEVKKELKKCLEEAQQCLQSMSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAKKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIMVGLFDKDVSAALSKKYPELYREGIRNVFFKWRVVTTWAIFSVYQSLVFYYFVTASSSSSQSASGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFMFILLYSGLMTPHDRQENVYFVIYVLMSTLYFYVAVLLVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPDGRSAVGLLEIPNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRLKIREKK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1642363 1654825 - Carg07996-RA Car04g00296 145721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00296 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Car04g00296 1226 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Car04g00296 1226 Coils Coil 769 789 - -
Car04g00296 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Car04g00296 1226 Pfam Cation transport ATPase (P-type) 520 614 - -
Car04g00296 1226 Pfam E1-E2 ATPase 142 375 - -
Car04g00296 1226 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00296 Car-Chr4:1642363 Car13g00882 Car-Chr13:9281521 0 dispersed
Car04g00296 Car-Chr4:1642363 Car04g01653 Car-Chr4:9522969 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00296 K14802 - csv:101207069 2286.15