Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00322 ATGGCTGATTCCAGGGATCTTCCTCCTCGCCGCGGAGCAGGAATAGTCAAAAGTATACGCTTGGAGAACTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTCAATTTCATTACAGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAGAGGCACCCAAAGGGCGTCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAAATGGAAAATTCTGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAGCCTCAGGTGCCATTGTTTTGAAAGATTCTCAAGGAAAGAAGGTTTCCAGCCGGAGGGATGAACTACGAGAGCTTGTAGACCATTTTAATATAGATGTTGAGAACCCGTGTGTGATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTCTTCTTCAAAGCTACTCTTCTCCAGCAAGTTGATGATCTGTTGAAAAACATTTTTCATCAACTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAGCTAAATGAGCTGCAAGGAAAAATTAAAAACATGGAGCACGTAGAAGAAATCTATCAACAAGTCCAACAGTTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAGCAGCTTCTGGAGCAAAGTGTAAAAATAGGAAAGCTCAAAGATCGCATCCCTATTTGTCGAGCAAAAATTGATCATCAACAGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCGGAAGTTAGAAGACTGAAGGACGAATTGCAAGAAACCCTTTCCTTGGCAACAAGAGAGAAGCTCGGGCTTGAAGAGGAGCATGGCCGCAAAATGAACTACATTCAAAAGATGGCGAAACGTGTTAGGCTGCTTGAGCAACAAGTTCACGATGTTCATGAGCAGCACATAAGAAATACACAGGTATCCCTTTCTCTTGGATTTGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGACTGAAGCTGCTAAGTCAACAGTCATGAGGTTATTTACTTATTTGCTTCGTAGGTCCGTTTTAAAAAAAAGAATTGTAGTCCATCGTATTGAATCAAGTTACAGGTTAAAGGAGGAGGAAAATGGCTTACTGGATAGTCTAAACTGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAAAAAAAGCATAATGAATTTTCACGCTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAAAATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACGTGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCATTCATCGTGACCAATCATCAAGATTCTCTTCTTTTGAGAGGATGTGCTAATGAAGCCAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTGATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCACGTTTGACCAACGGATCAAAAATCTCAAGGAGGTCTTTACGTTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATACATCAAACATGAAGGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTTCGGGGTCTTGAAGAGAACCTATGCAATGCCAAGCGGAGATGTCAAAACGCGGAACGCATTTTAATGTCCAAAAATTTGGAGCTACAAGATTTACGGAAGTCACAGGTTGCTGGAACTAGTTCATTACCTTCATCAAACGTTGACGAGCTTCATCAAGAAATTTCTAAAATCAAAGAGGAGATGGAAGAGAATAAATCGCTTCTGGAAAAGTTCAGAGTGAGAATGAAAGATGCGGAAGCCAAGGCAAAAGATCTTAAACTATCATTTGAGGATCTGTGTGAGTCAGCGAAAGGAGAAGTTGATGCATATGAAGAAGCCGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCTGCCGAAAAGGAGATGAATCATTATGAAGGTATTATGACTAACAAGGTCCTGTTTGATATCAAAGAGGCAGAGAGACAATATGAGGAGCTCGAGCGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATCTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAAACAGGCTAAATCAGAGACTTAGTAACGAGACCCGACAATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCTTCGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGTCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAATCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGTCACAAGGTTCCCAATGGATATTTATCACACCTCATGATATCGGCGTGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3255 41.04 MADSRDLPPRRGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRARGTQRASTLKDFIKTGCSHAVIQVEMENSGEDAFKPGIYGNVIIIERRISEASGAIVLKDSQGKKVSSRRDELRELVDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFHQLRSANALVDDLESTIRPVEKELNELQGKIKNMEHVEEIYQQVQQLKKKLAWSWVYDVDKQLLEQSVKIGKLKDRIPICRAKIDHQQGLAEKLRERFIEKKAQIASMMEKTSEVRRLKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDVHEQHIRNTQVSLSLGFAEESEIEEKLKELELETEAAKSTVMRLFTYLLRRSVLKKRIVVHRIESSYRLKEEENGLLDSLNCGRSEIKKIAEEIEGYEKKHNEFSRSIRELRQHQTNKVTAFGGDRVIQLLRVIERQNRRFKKPPIGPIGAHLNLVNGDVWAPAVENAIGRLLNAFIVTNHQDSLLLRGCANEANYRQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVTFDQRIKNLKEVFTLDGYKMFSRGSVQTILPPVKRPRSGRLCSSFDDQIKSLEKDTSNMKEEAEQCRKRKRAAEEQLRGLEENLCNAKRRCQNAERILMSKNLELQDLRKSQVAGTSSLPSSNVDELHQEISKIKEEMEENKSLLEKFRVRMKDAEAKAKDLKLSFEDLCESAKGEVDAYEEAERDMLQIERDLHSAEKEMNHYEGIMTNKVLFDIKEAERQYEELERHRKESYSKASIISPESEIEALGDWDGSTPEQLSAQLNRLNQRLSNETRQCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKINYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALSQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1788256 1800519 - Carg08022-RA Car04g00322 145747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00322 1084 Pfam RecF/RecN/SMC N terminal domain 16 1074 IPR003395 -
Car04g00322 1084 Coils Coil 284 332 - -
Car04g00322 1084 Coils Coil 667 729 - -
Car04g00322 1084 Coils Coil 798 825 - -
Car04g00322 1084 Coils Coil 742 790 - -
Car04g00322 1084 Coils Coil 203 230 - -
Car04g00322 1084 Coils Coil 376 396 - -
Car04g00322 1084 Coils Coil 827 854 - -
Car04g00322 1084 Coils Coil 340 360 - -
Car04g00322 1084 Coils Coil 882 920 - -
Car04g00322 1084 Coils Coil 436 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00322 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1801.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00322 Car-Chr4:1788256 Car17g00926 Car-Chr17:7591702 3.99E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00349 . Car04g00322 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00928 . 4 1049 Structural Maintenance of Chromosomes family AT5G15920 65.8 0.0e+00 1291.2
Car17g00926 . 4 237 Structural Maintenance of Chromosomes family AT5G15920 81.6 1.3e-106 385.2
Car04g00322 . 13 1084 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1179.1
Car04g00322 . 10 1084 Structural Maintenance of Chromosomes family AT5G61460 62.6 0.0e+00 1248.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00322 Car_Chr04 FPKM 0.0 0.0 0.0 0.390398 0.0 0.0 0.0 0.0 0.0 0.0