Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00361 ATGTCGGTGATGTTGCGTTCTTCGTCTTCTCTGTGGATAATTTTGGTGCTCCGGTTTGTTTCGCTGCTCTCCGCTAATCCTGAAGGCGATGCTTTGTATGCATTGAAGTCGAATTTACAAGATCCCAACAGCGTATTGCAGAGTTGGGATCCAACACTTGTTAATCCCTGCACTTGGTTTCATGTCACCTGTGACAACGCGAATACTGTCATTCGAGTTGATCTTGGAAATGCAAATCTATCTGGTACATTAGTTCCACAACTTGGTCAGCTTCCGAGTTTACAGTATCTGGAACTCTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGATAATCTGCGTTTCCTGCGTCTTAACAACAACAGCTTGACAGGAACTATTCCAATGTCATTAACCAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAATCACCTAACTGGAGATATTCCGATCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTAATAATAATCTAAATGAGTCTGCCGTACGTCCTCCACCATCTCCTTTACCTTCTTCACCAACCCCCACATCAGGTAATTCTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGGTGCTGCTTTACTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGGAAGAAACCTCAAGATCATTTCTTTGATGTACCTGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTTGCTACAGATAATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGTCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGATTTTGTATGACACCAACTGAGCGGGTGTTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCGTGTTTAAGAGAGCGTTCAGAATCACAACCTCCACTTAATTGGTCGAACCGAAAACGCATTGCTTTGGGATCGGCAAGGGGACTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATAGGGATGTGAAAGCTGCAAACATTTTGCTTGACGAGGAGTTTGAAGCCGTGGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTAAGAGGAACAATTGGGCATATAGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAGAAGACTGACGTTTTTGGGTACGGGGTAATGCTCCTCGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTTAAAGGACTTCTAAAAGACAAGAGGCTTGAAACGCTAGTCGATCCCGATTTTGCGGGTAACTATCCCGACAATGAAGTCGAGCAGCTCATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACCGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTCGAGGGTGATGGGTTATCTGAAAGATGGGAAGAATGGCAGAAAGAGGATCGGTTCCAACAAGAAGTAAGCCGCAATCCCCACCCAAGTACTACTTGGATTCTTGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGGTCCGAGATGA 1839 44.92 MSVMLRSSSSLWIILVLRFVSLLSANPEGDALYALKSNLQDPNSVLQSWDPTLVNPCTWFHVTCDNANTVIRVDLGNANLSGTLVPQLGQLPSLQYLELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLDNLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFANNNLNESAVRPPPSPLPSSPTPTSGNSATGAIAGGVAAGAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSESQPPLNWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDFAGNYPDNEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLSERWEEWQKEDRFQQEVSRNPHPSTTWILDSTAEMPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2040497 2048181 + Carg08061-RA Car04g00361 145786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00361 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Car04g00361 612 Pfam Protein kinase domain 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00361 612 MobiDBLite consensus disorder prediction 580 612 - -
Car04g00361 612 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00361 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Car04g00361 612 MobiDBLite consensus disorder prediction 200 222 - -
Car04g00361 612 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00361 Car-Chr4:2040497 Car05g00023 Car-Chr5:126905 0 dispersed
Car08g00009 Car-Chr8:44165 Car04g00361 Car-Chr4:2040497 9.25E-53 dispersed
Car11g00690 Car-Chr11:3873113 Car04g00361 Car-Chr4:2040497 2.31E-26 dispersed
Car16g00732 Car-Chr16:4641025 Car04g00361 Car-Chr4:2040497 1.16E-39 dispersed
Car17g01299 Car-Chr17:9794750 Car04g00361 Car-Chr4:2040497 9.77E-71 dispersed
Car09g01089 Car-Chr9:10183414 Car04g00361 Car-Chr4:2040497 0 transposed
Car20g00882 Car-Chr20:8660234 Car04g00361 Car-Chr4:2040497 4.10E-177 transposed
Car16g00232 Car-Chr16:1299400 Car04g00361 Car-Chr4:2040497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88767 PF00069 Pkinase 6.40E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00361 K13416 - csv:101216389 1064.29