Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00386 ATGGGAAGAGGGAAGATTGTGATAAGAAGAATAGACAATTCAACGAGCAGACAAGTGACGTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTCGAGAGCTTTCAATCCTTTGTGATGCCGAAGTTGGATTGATCGTTTTCTCAAGCACAGGAAAGCTCTATGATTATTCCACCACCAGCATAAGATCAATTACCGATCGTTACTACAAGGTGAAGGAGGAGCAAAATCAGCTGATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCAGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAATTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGTAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTG 693 40.12 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYSTTSIRSITDRYYKVKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESKLEMSLKGVRVEKEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETSVPGIKL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2188168 2196214 + Carg08086-RA Car04g00386 145811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00386 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car04g00386 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car04g00386 231 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g00386 231 Coils Coil 72 99 - -
Car04g00386 231 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g00386 231 MobiDBLite consensus disorder prediction 210 231 - -
Car04g00386 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01215 Car-Chr3:9481463 Car04g00386 Car-Chr4:2188168 2.01E-52 dispersed
Car04g00386 Car-Chr4:2188168 Car04g01240 Car-Chr4:7144068 3.45E-84 dispersed
Car20g00220 Car-Chr20:1276126 Car04g00386 Car-Chr4:2188168 2.15E-28 dispersed
Car16g00251 Car-Chr16:1590857 Car04g00386 Car-Chr4:2188168 3.27E-128 wgd
Car03g00779 Car-Chr3:6495384 Car04g00386 Car-Chr4:2188168 3.65E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3254 PF01486 K-box 3.50E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00386 K09264 - csv:101203098 397.127