Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00399 ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTTGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGCGAACTAAATGCACAACTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAACTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCGGATCGGATTTTGATTCAAACCTCCAATGGCAACCCACCCCCGCAATTCTTCTCGACTCCGACGCCTGCAAACCCGAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 48.48 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFSTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2272439 2273186 - Carg08099-RA Car04g00399 145824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00399 219 Coils Coil 138 165 - -
Car04g00399 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Car04g00399 219 Coils Coil 93 120 - -
Car04g00399 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00399 - - - csv:101221957 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00399 Car-Chr4:2272439 Car17g00071 Car-Chr17:415544 1.33E-36 dispersed
Car04g00399 Car-Chr4:2272439 Car07g00106 Car-Chr7:643800 4.91E-54 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3255 PF00319 SRF-TF 3.50E-24 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00399 Car_Chr04 FPKM 5.782886 6.893818 7.137482 7.908065 20.5781 19.645433 20.677816 0.769648 0.923778 0.973669