Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00417 ATGGGTGCTCCGAAACAGAAATGGACTAACCAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGATAAGGCGAGGTTGGCACTTAAGAGATCGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCTCAAGGCATTGCCGTCCAAAGTGAAGATGAATTTCCGGAAGCTAAGACTGTTTCCCTTTCCTTGGACTTCAAGCAGATAGCTGGTCCAAAGCTATCAAATGTAAGGTTGGTCAAATCCTTCATTGTTTTTCTAAAAGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCATTGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGGTCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCGTCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGGCTCGCTCCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAGATAACAGAGATGAAATGTGTACACTTGCAAAAGCTCAAATGGATCTCGAATTGGCGAAGATGAGGACCATGACATCCCAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGGTAAAACTGCATAATATTTACTGTTGA 1032 43.51 MGAPKQKWTNQEEAALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSRDKARLALKRSHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDFKQIAGPKLSNVRLVKSFIVFLKEEEDEEEEEEEEEEEEKEVERTERDALYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEGQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSCERRGSMLLLDDQHRASMRDNRDEMCTLAKAQMDLELAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAAAAQSFAEAAMKTLKGRNLPKMVKLHNIYC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2361630 2365359 + Carg08117-RA Car04g00417 145842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00417 343 Coils Coil 128 157 - -
Car04g00417 343 Coils Coil 282 319 - -
Car04g00417 343 MobiDBLite consensus disorder prediction 135 155 - -
Car04g00417 343 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car04g00417 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 161 229 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00417 343 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Car04g00417 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Car04g00417 343 Pfam linker histone H1 and H5 family 166 222 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00417 343 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00417 Car-Chr4:2361630 Car07g00569 Car-Chr7:2884994 1.82E-68 dispersed
Car16g00279 Car-Chr16:1733520 Car04g00417 Car-Chr4:2361630 1.87E-29 wgd
Car03g00826 Car-Chr3:6723064 Car04g00417 Car-Chr4:2361630 3.11E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3256 PF00538 Linker_histone 9.40E-08 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00417 K09422 - csv:101218411 411.764