Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00417 ATGGGTGCTCCGAAACAGAAATGGACTAACCAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAACATGGAGCTGGAAAGTGGCGAACAATACTTAAGGATCCTGAATTCAGTGATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGATAAGGCGAGGTTGGCACTTAAGAGATCGCATGCTCCTAAAAAAGATGAGAGTATTGTGGCTCAAGGCATTGCCGTCCAAAGTGAAGATGAATTTCCGGAAGCTAAGACTGTTTCCCTTTCCTTGGACTTCAAGCAGATAGCTGGTCCAAAGCTATCAAATGTAAGGTTGGTCAAATCCTTCATTGTTTTTCTAAAAGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAACAGAAAGAGATGCATTGTATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGAGAACGTAGTGGCTCTATTAAGAATAGCATTGCTTTATATATAGAGGGTCAGTACTGGGCTCCTCCAGACTTCAAGCGGTTGTTATCGTCGAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTTAAGGTTAAACGGAGATACAGGCTCGCTCCAACGGTGTCTTCTTGCGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAGATAACAGAGATGAAATGTGTACACTTGCAAAAGCTCAAATGGATCTCGAATTGGCGAAGATGAGGACCATGACATCCCAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGGTAAAACTGCATAATATTTACTGTTGA 1032 43.51 MGAPKQKWTNQEEAALKAGVVKHGAGKWRTILKDPEFSDVLYLRSNVDLKDKWRNMSVMANGWGSRDKARLALKRSHAPKKDESIVAQGIAVQSEDEFPEAKTVSLSLDFKQIAGPKLSNVRLVKSFIVFLKEEEDEEEEEEEEEEEEKEVERTERDALYDCHRLDNLIIEAISTLRERSGSIKNSIALYIEGQYWAPPDFKRLLSSKLKFLTASGKLVKVKRRYRLAPTVSSCERRGSMLLLDDQHRASMRDNRDEMCTLAKAQMDLELAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAAAAQSFAEAAMKTLKGRNLPKMVKLHNIYC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2361630 2365359 + Carg08117-RA Car04g00417 145842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00417 343 Coils Coil 128 157 - -
Car04g00417 343 Coils Coil 282 319 - -
Car04g00417 343 MobiDBLite consensus disorder prediction 135 155 - -
Car04g00417 343 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car04g00417 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 161 229 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00417 343 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Car04g00417 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Car04g00417 343 Pfam linker histone H1 and H5 family 166 222 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00417 343 MobiDBLite consensus disorder prediction 135 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00417 K09422 MYBP; transcription factor MYB, plant - csv:101218411 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00417 Car-Chr4:2361630 Car07g00569 Car-Chr7:2884994 1.82E-68 dispersed
Car16g00279 Car-Chr16:1733520 Car04g00417 Car-Chr4:2361630 1.87E-29 wgd
Car03g00826 Car-Chr3:6723064 Car04g00417 Car-Chr4:2361630 3.11E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00417 . 1 336 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 8.1e-65 244.6
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 1.3e-62 237.3
Car07g00569 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 4.1e-61 232.3
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.5 6.6e-67 251.5
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 9.5e-66 247.7
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 2.9e-59 226.1
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 8.0e-57 218.0
Car14g01104 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.1e-69 259.2
Car01g00041 CST 1 274 Single Myb Histone (SMH) Gene Family AT1G17520 51.0 5.4e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3256 PF00538 Linker_histone 9.40E-08 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00417 Car_Chr04 FPKM 22.429424 19.988924 21.797276 21.662922 23.16637 21.272808 26.280228 13.460192 12.341969 16.914656