Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00421 | ATGGAGCCTATAGCAGAAAGAGAATGGATCTCTGAGGAATCTGATTTCATGGCTAATTTGCTCAGTAATTACTGTCTCCCAAATGAGCTAAGTTCAGATTTGAGCTTGGAAATCCCTTGTGCTTATTGGGAATCCAGTGAACCACCATCATTGTCCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATTCCCTCCCTCTTTGGCTGCCTAATGGTGCTTCTTTGTCCTTGGATTTCTCGATGGAGGACGATCGCTTGGACGACAACGGTTCGAGTCGAAAAACAAGGCAATGTAGGCTGCAACACTCCCTTGCTGACCCTGCTGCTGCTGCTGCTGCTGTTGCTGTCAATGGGAAAAAGAGGAAAGCTGAGATACATGAGAAAGTTGCATCGATGTCGGTCGTCGAGAACTCGAAGAAGAGGAACGCAAGGCCACCGAAGATCATGAAGCTTGGTTCGGCTAGCTGCAATGATGAGGATCACATTGGTCAGTGTACAAGCAGCTTTAGCTCTGAGGAGTCTCAAGAAATCAATGGTGGAATTAGTTCAAGTTCAAGCTCAAAAGGGTCTGCCTCTTTGACCTCAAATGGGAAGCCAAGAGCTAGTAGAGGCTCAGCCACTGACCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAAGATCTTACAAAGCCTCGTCCCCAATGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTGAATATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTACAATGGAATGGATATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAGTAG | 888 | 44.93 | MEPIAEREWISEESDFMANLLSNYCLPNELSSDLSLEIPCAYWESSEPPSLSMAAMDEPSYYSSDSLPLWLPNGASLSLDFSMEDDRLDDNGSSRKTRQCRLQHSLADPAAAAAAVAVNGKKRKAEIHEKVASMSVVENSKKRNARPPKIMKLGSASCNDEDHIGQCTSSFSSEESQEINGGISSSSSSKGSASLTSNGKPRASRGSATDPQSLYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2404628 | 2405768 | - | Carg08121-RA | Car04g00421 | 145846 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00421 | 295 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 207 | 256 | IPR011598 | GO:0046983 | |
| Car04g00421 | 295 | MobiDBLite | consensus disorder prediction | 161 | 211 | - | - | |
| Car04g00421 | 295 | MobiDBLite | consensus disorder prediction | 135 | 217 | - | - | |
| Car04g00421 | 295 | Pfam | Helix-loop-helix DNA-binding domain | 217 | 257 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00421 | Car-Chr4:2404628 | Car10g00442 | Car-Chr10:2224460 | 8.44E-21 | dispersed | |
| Car11g01142 | Car-Chr11:9163980 | Car04g00421 | Car-Chr4:2404628 | 4.57E-52 | wgd | |
| Car16g00289 | Car-Chr16:1789643 | Car04g00421 | Car-Chr4:2404628 | 1.46E-108 | wgd | |
| Car19g00413 | Car-Chr19:5990413 | Car04g00421 | Car-Chr4:2404628 | 1.46E-12 | wgd | |
| Car04g00421 | Car-Chr4:2404628 | Car05g00125 | Car-Chr5:639016 | 3.31E-52 | wgd | |
| Car04g00421 | Car-Chr4:2404628 | Car09g00239 | Car-Chr9:1316589 | 3.13E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3257 | PF00010 | HLH | 6.70E-10 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00421 | - | - | mcha:111017743 | 363.614 |