Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00450 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAAAATTCCATTCCCGGCATCAATCCGGCGGGAAATGGTGGTGCAAATTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCAGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGTTGGGTCAGGTGGTTTCCGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGCTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTTCCCCACTAAATGGAAAACCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAAGTAATTGACCATGAAGCTCTACATAATTTAGACAAAGCAATTGACCATAAAGCTCTACATGATACATTTTCGGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGTTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGGCAAATCCAAATTTAACAATGTGTTTGTCAAGAATCTTTCTGAGACAACTACGGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACCAGTATCGTTGTGATGAGGGATGCGGATGGCAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAATGCTGACGATGCTGCTAGGGCAGTTGATGCCCTCAATGGAAATGTATTTGATGATAAGGAGTGGTATGTTGGGAGAGCACAGAAAAAATCTGAAAGAGAAGTAGAATTAAAGAACCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGGCCTTTCGCGGGTATAGTATTTTGGTCATGCGTGACCCCAATGGTGTGAGCAGAGGTTCTGGATTTGTTGCGTTTTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATAGTTGTTAGCAAACCATTGTATGTAGCTCTTGCACAGAGGAAAGAAGATAGAAGGGCCAGATTGCAGGCTCAGTTCTCTCAAATACGACCGGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATCTATCCCCCTGGTGGTCCAGGTATCGGACAGCAAATGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAACAGGGTCAGCAAGGGCCGCGTCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAAACCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCGGGAAGAGGTCTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGTATGCCGTTGCGTGATGCATCCCTCTCCTCTCAACCTGTCCCTGTAGGTGCTCTGGCATCTGCTTTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGCTGGAGCCAGACAACGCAGCCAAGGTAACTGGAATGCTTCTTGAGATGGACCAGACTGAGGTCTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCGAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCTGCAACCCAGCAGCAGCAAGCTGGCAATGCAGCAGCTGATCAGCTATCCTCTCTGTCGCTGACTGAGAACCTCGTGTCGTGA 1995 46.27 MAAQVQAQPQNSIPGINPAGNGGANFVTTSLYVGDLDQNVTDSQLYDIFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKVIDHEALHNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENADDAARAVDALNGNVFDDKEWYVGRAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSISDDKLKEAFRGYSILVMRDPNGVSRGSGFVAFSTPEEASRALMEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQNQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLSSLSLTENLVS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2548265 2553327 + Carg08150-RA Car04g00450 145875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00450 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 396 IPR000504 GO:0003723
Car04g00450 664 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Car04g00450 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Car04g00450 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 201 IPR000504 GO:0003723
Car04g00450 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 199 IPR000504 GO:0003723
Car04g00450 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 290 IPR000504 GO:0003723
Car04g00450 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 389 IPR000504 GO:0003723
Car04g00450 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Car04g00450 664 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Car04g00450 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 297 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00450 Car-Chr4:2548265 Car04g02381 Car-Chr4:19080168 0 dispersed
Car11g01101 Car-Chr11:8668681 Car04g00450 Car-Chr4:2548265 0 wgd
Car16g00315 Car-Chr16:1929225 Car04g00450 Car-Chr4:2548265 3.32E-44 wgd
Car19g00450 Car-Chr19:6228990 Car04g00450 Car-Chr4:2548265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00450 K13126 - csv:101219802 1118.22